RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SNX25Q9H3E2 840 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 SEMA4AQ9H3S1 761 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 ECT2Q9H8V3 914 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 USP25Q9UHP3 1055 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 PCDHGA2Q9Y5H1 932 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 SOBPA7XYQ1 873 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 HHLA1C9JL84 531 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 LEFTY2O00292 366 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 NCAM2O15394 837 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 PAPSS2O95340 614 aaPredicted RBP11.15□□□□□ -0.62
LIG1-213ENST00000596672 TCF3P15923 654 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 HDCP19113 662 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 OPRD1P41143 372 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 GCLMP48507 274 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 NDST1P52848 882 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 TNNC1P63316 161 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 PLCB2Q00722 1185 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 TRPC3Q13507 836 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 ZNF699Q32M78 642 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 CEP135Q66GS9 1140 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 HEATR6Q6AI08 1181 aaKnown RBP11.15□□□□□ -0.62
LIG1-213ENST00000596672 CRYBG2Q8N1P7 616 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 GUF1Q8N442 669 aaKnown RBP11.15□□□□□ -0.62
LIG1-213ENST00000596672 TTC16Q8NEE8 873 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 OSCP1Q8WVF1 389 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 SYAP1Q96A49 352 aaPredicted RBP11.15□□□□□ -0.62
LIG1-213ENST00000596672 ELOVL4Q9GZR5 314 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 OSER1Q9NX31 292 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 SMPD4Q9NXE4 827 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 CHORDC1Q9UHD1 332 aaPredicted RBP11.15□□□□□ -0.62
LIG1-213ENST00000596672 ARHGAP26Q9UNA1 814 aa11.15□□□□□ -0.62
LIG1-213ENST00000596672 SMG5Q9UPR3 1016 aaKnown RBP11.15□□□□□ -0.62
LIG1-213ENST00000596672 TRAV19A0A0A6YYK7 116 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 FAM92AA1XBS5 289 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 GREM1O60565 184 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 KINO60870 393 aaKnown RBP11.14□□□□□ -0.63
LIG1-213ENST00000596672 PHACTR2O75167 634 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 CKMP06732 381 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 USP17L7P0C7H9 530 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 ZDHHC11BP0C7U3 371 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 HNRNPLP14866 589 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIG1-213ENST00000596672 BMP6P22004 513 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 SLC6A11P48066 632 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 VAMP7P51809 220 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 SLC7A9P82251 487 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 KCNB1Q14721 858 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 NFIL3Q16649 462 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 ZNF667Q5HYK9 610 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 C12orf40Q86WS4 652 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 SPATA20Q8TB22 786 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 GOLGA5Q8TBA6 731 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 RUBCNQ92622 972 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 CCSER2Q9H7U1 834 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 KIF9Q9HAQ2 790 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 FAM49BQ9NUQ9 324 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 DUS2Q9NX74 493 aaKnown RBP11.14□□□□□ -0.63
LIG1-213ENST00000596672 UXTQ9UBK9 157 aaPredicted RBP11.14□□□□□ -0.63
LIG1-213ENST00000596672 HCN2Q9UL51 889 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 KNL1Q8NG31 2342 aa11.14□□□□□ -0.63
LIG1-213ENST00000596672 IKBKBO14920 756 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 MAPK13O15264 365 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 COCHO43405 550 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 RNF40O75150 1001 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 GADD45BO75293 160 aaPredicted RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 TBX18O95935 607 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 CYP17A1P05093 508 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 MYL1P05976 194 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 CD44P16070 742 aaKnown RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 NR2F2P24468 414 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 PRCPP42785 496 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 CCR3P51677 355 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 IFRD2Q12894 506 aaPredicted RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 PDGFRLQ15198 375 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 MAPRE1Q15691 268 aaKnown RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 SGSM1Q2NKQ1 1148 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 DGKKQ5KSL6 1271 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 RHBDF2Q6PJF5 856 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 FILIP1Q7Z7B0 1213 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 ZC3H3Q8IXZ2 948 aaKnown RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 ADGRG2Q8IZP9 1017 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 SLC2A14Q8TDB8 520 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 ATRIPQ8WXE1 791 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 TATDN2Q93075 761 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 MSANTD3Q96H12 275 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 ARID3AQ99856 593 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 SCAND2PQ9GZW5 306 aaPredicted RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 NMUR1Q9HB89 426 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 CSNK1G1Q9HCP0 422 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 THG1LQ9NWX6 298 aaKnown RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 TRPM5Q9NZQ8 1165 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 GMIPQ9P107 970 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 ZMYM5Q9UJ78 669 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 CPQQ9Y646 472 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 MAP1BP46821 2468 aaKnown RBP11.13□□□□□ -0.63
LIG1-213ENST00000596672 CACNA1EQ15878 2313 aa11.13□□□□□ -0.63
LIG1-213ENST00000596672 TRIM49BA6NDI0 452 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 K7EQS6 105 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 TRIM66O15016 1216 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 TRIM24O15164 1050 aa11.12□□□□□ -0.63
LIG1-213ENST00000596672 AP1G2O75843 785 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms