RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 MAPK8IP1Q9UQF2 711 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 MYO16Q9Y6X6 1858 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 SCAMP3O14828 347 aaKnown RBP13.31□□□□□ -0.28
UPF1-203ENST00000594504 DCLK1O15075 740 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 LRP3O75074 770 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 NR3C1P04150 777 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 DRD1P21728 446 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 GNL1P36915 607 aaPredicted RBP13.31□□□□□ -0.28
UPF1-203ENST00000594504 MAGEA11P43364 429 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 CACNA2D1P54289 1103 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 AMPD2Q01433 879 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 NFIL3Q16649 462 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 MDH1BQ5I0G3 518 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 PPM1JQ5JR12 505 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 CACNA2D4Q7Z3S7 1137 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 WDR49Q8IV35 697 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 CPA6Q8N4T0 437 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 OR6B3Q8NGW1 331 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 CCDC127Q96BQ5 260 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 DPEP3Q9H4B8 488 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 TMEM30AQ9NV96 361 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 MAN1B1Q9UKM7 699 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 INVSQ9Y283 1065 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 PTPRDP23468 1912 aa13.31□□□□□ -0.28
UPF1-203ENST00000594504 LEFTY2O00292 366 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 CLDN5O00501 218 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 ABL1P00519 1130 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 KCNA4P22459 653 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 RPL13P26373 211 aaKnown RBP13.3□□□□□ -0.28
UPF1-203ENST00000594504 PPP1R2P41236 205 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 PRCPP42785 496 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 RAP1GAPP47736 663 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 SEC13P55735 322 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 MYL6P60660 151 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 CYP24A1Q07973 514 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 IFRD2Q12894 506 aaPredicted RBP13.3□□□□□ -0.28
UPF1-203ENST00000594504 STIM1Q13586 685 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 PSMD6Q15008 389 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 CAMK4Q16566 473 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 EDRF1Q3B7T1 1238 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 ZCWPW2Q504Y3 356 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 DENND5BQ6ZUT9 1274 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 MYCBPAPQ8TBZ2 947 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 SPATA17Q96L03 361 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 FNBP1Q96RU3 617 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 CGRRF1Q99675 332 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 GZF1Q9H116 711 aaPredicted RBP13.3□□□□□ -0.28
UPF1-203ENST00000594504 SNX25Q9H3E2 840 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 CLSTN2Q9H4D0 955 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 KIAA1468Q9P260 1216 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 DNAH14Q0VDD8 3507 aa13.3□□□□□ -0.28
UPF1-203ENST00000594504 HELZP42694 1942 aaKnown RBP13.29□□□□□ -0.28
UPF1-203ENST00000594504 CCDC163A0A0D9SF12 145 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 F8VP50 259 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 EPN2O95208 641 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 PTPN1P18031 435 aaKnown RBP13.29□□□□□ -0.28
UPF1-203ENST00000594504 NR2F2P24468 414 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 ANXA13P27216 316 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 OPRD1P41143 372 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 SLC6A11P48066 632 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 CASP4P49662 377 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 MORC3Q14149 939 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 DMC1Q14565 340 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 GAB4Q2WGN9 574 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 WDR72Q3MJ13 1102 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 AASDHQ4L235 1098 aaPredicted RBP13.29□□□□□ -0.28
UPF1-203ENST00000594504 VSTM1Q6UX27 236 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 CAMKK1Q8N5S9 505 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 TRIML1Q8N9V2 468 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 PLEKHO2Q8TD55 490 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 ATP2A3Q93084 1043 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 B3GNT5Q9BYG0 378 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 DUSP15Q9H1R2 295 aaPredicted RBP13.29□□□□□ -0.28
UPF1-203ENST00000594504 SMPD4Q9NXE4 827 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 TRPM5Q9NZQ8 1165 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 NXF1Q9UBU9 619 aaKnown RBP13.29□□□□□ -0.28
UPF1-203ENST00000594504 ARHGAP26Q9UNA1 814 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 FRMD4BQ9Y2L6 1034 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 KIAA1549LQ6ZVL6 1849 aa13.29□□□□□ -0.28
UPF1-203ENST00000594504 DMXL1Q9Y485 3027 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 ZNF840PA6NDX5 716 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 A8MXQ7 604 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 K7EQS6 105 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 BIN1O00499 593 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 PSMA7O14818 248 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 MAPK13O15264 365 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 ADRB1P08588 477 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 ZNF806P0C7X5 589 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 CDH8P55286 799 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 LRRC63Q05C16 580 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 TAF10Q12962 218 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 NR1H3Q13133 447 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 MAPRE1Q15691 268 aaKnown RBP13.28□□□□□ -0.28
UPF1-203ENST00000594504 PLK5Q496M5 336 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 FBXO43Q4G163 708 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 C2orf27AQ580R0 203 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 CEP135Q66GS9 1140 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 ISM2Q6H9L7 571 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 SYT13Q7L8C5 426 aa13.28□□□□□ -0.28
UPF1-203ENST00000594504 FILIP1Q7Z7B0 1213 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms