RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 FAM171A1Q5VUB5 890 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 FUT10Q6P4F1 479 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 LRRTM3Q86VH5 581 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 BCL7CQ8WUZ0 217 aaPredicted RBP13.9□□□□□ -0.18
VRK3-205ENST00000593919 BADQ92934 168 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 CD101Q93033 1021 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 MYLPFQ96A32 169 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 MIS12Q9H081 205 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 TMEM30AQ9NV96 361 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 TMLHEQ9NVH6 421 aa13.9□□□□□ -0.18
VRK3-205ENST00000593919 DDX3YO15523 660 aaKnown RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 PROSCO94903 275 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 OAZ2O95190 189 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 GLI1P08151 1106 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 FAM200BP0CF97 657 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 RFC1P35251 1148 aaPredicted RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 RPL34P49207 117 aaKnown RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 ALDH7A1P49419 539 aaKnown RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 SLC8A3P57103 927 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 FAM193AP78312 1265 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 TSPY1Q01534 308 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 OGDHQ02218 1023 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 VARS2Q5ST30 1063 aaKnown RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 DAB2IPQ5VWQ8 1189 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 OR6B2Q6IFH4 312 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 OLFML1Q6UWY5 402 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 PIGZQ86VD9 579 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 CEP57Q86XR8 500 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 SCUBE3Q8IX30 993 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 C7orf61Q8IZ16 206 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 JOSD2Q8TAC2 188 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 KRT35Q92764 455 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 B3GALT6Q96L58 329 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 EPB41L5Q9HCM4 733 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 ESYT3A0FGR9 886 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 ZSCAN5CA6NGD5 496 aaPredicted RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 MIF4GDA9UHW6 222 aaKnown RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 PGRMC1O00264 195 aaKnown RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 PAPSS1O43252 624 aaPredicted RBP13.89□□□□□ -0.19
VRK3-205ENST00000593919 AP1G2O75843 785 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 MARCKSL1P49006 195 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 CACNA2D1P54289 1103 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 EPHB4P54760 987 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 MAP3K7CLP57077 242 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 GUCY2DQ02846 1103 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 FPGSQ05932 587 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 PPIGQ13427 754 aaKnown RBP eCLIP13.89□□□□□ -0.193e-6■■■■□ 22
VRK3-205ENST00000593919 EMC1Q8N766 993 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 FAM71BQ8TC56 605 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 ACTRT1Q8TDG2 376 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 ALG3Q92685 438 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 SMARCD1Q96GM5 515 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 AP1M1Q9BXS5 423 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 RHOBTB2Q9BYZ6 727 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 CYLDQ9NQC7 956 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 IP6K2Q9UHH9 426 aa13.89□□□□□ -0.19
VRK3-205ENST00000593919 ZBBXA8MT70 800 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 RAD51CO43502 376 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 OR4Q2P0C623 313 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 FGFR3P22607 806 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 TNFRSF8P28908 595 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 CTNNA1P35221 906 aaKnown RBP13.88□□□□□ -0.19
VRK3-205ENST00000593919 SLC1A1P43005 524 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 ELAVL2Q12926 359 aaKnown RBP13.88□□□□□ -0.19
VRK3-205ENST00000593919 MAPRE1Q15691 268 aaKnown RBP13.88□□□□□ -0.19
VRK3-205ENST00000593919 DCAF12L1Q5VU92 463 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 ZNF365Q70YC5 407 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 IFT20Q8IY31 132 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 ZMIZ2Q8NF64 920 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.88□□□□□ -0.19
VRK3-205ENST00000593919 CLEC4CQ8WTT0 213 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 IFT81Q8WYA0 676 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 HSFY1Q96LI6 401 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 KCNK16Q96T55 309 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 SMOQ99835 787 aa13.88□□□□□ -0.19
VRK3-205ENST00000593919 GRAP2O75791 330 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 LCP1P13796 627 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 BDNFP23560 247 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 ACADSBP45954 432 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 CARSP49589 748 aaKnown RBP13.87□□□□□ -0.19
VRK3-205ENST00000593919 RABGGTBP53611 331 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 SNX16P57768 344 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 ADIGQ0VDE8 80 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 MRPL58Q14197 206 aaKnown RBP13.87□□□□□ -0.19
VRK3-205ENST00000593919 BTG3Q14201 252 aaPredicted RBP13.87□□□□□ -0.19
VRK3-205ENST00000593919 RTP2Q5QGT7 225 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 UBL4BQ8N7F7 174 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 FNIP1Q8TF40 1166 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.87□□□□□ -0.191e-6■■■□□ 15.1
VRK3-205ENST00000593919 MED4Q9NPJ6 270 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 GDF3Q9NR23 364 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 TMEM59LQ9UK28 342 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 ADAM21Q9UKJ8 722 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 CHD7Q9P2D1 2997 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 LAMA3Q16787 3333 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 CCDC66A2RUB6 948 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 ERICH4A6NGS2 130 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 F8VP50 259 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 CAPN15O75808 1086 aa13.87□□□□□ -0.19
VRK3-205ENST00000593919 SYF2O95926 243 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms