RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SCAPQ12770 1279 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 PMS2P11Q13670 270 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 ARL13BQ3SXY8 428 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 NOMO2Q5JPE7 1267 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 FAM102AQ5T9C2 384 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC9A4Q6AI14 798 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 HIBCHQ6NVY1 386 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 FOXR2Q6PJQ5 311 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 CATSPERGQ6ZRH7 1159 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 RNF44Q7L0R7 432 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 ZDHHC17Q8IUH5 632 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 SYT12Q8IV01 421 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 CFAP52Q8N1V2 620 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC15A4Q8N697 577 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 FAM46DQ8NEK8 389 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 OR56A1Q8NGH5 318 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 POF1BQ8WVV4 589 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 TMEM41AQ96HV5 264 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 PHACTR3Q96KR7 559 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 PPP1R9BQ96SB3 815 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 DHX36Q9H2U1 1008 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 CASS4Q9NQ75 786 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 ZNF212Q9UDV6 495 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 SHOC2Q9UQ13 582 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 CDYLQ9Y232 598 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 LOC102723971A0A1B0GUV8 181 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 E9PLN8 166 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 AREL1O15033 823 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 MOSPD3O75425 235 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 RASSF9O75901 435 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 KIF20AO95235 890 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 IDEP14735 1019 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 ABCB4P21439 1286 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 GPD1P21695 349 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 MAPK10P53779 464 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 LOXL3P58215 753 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 ICA1Q05084 483 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 STARD3Q14849 445 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 IQCB1Q15051 598 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 INSCQ1MX18 579 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 SLC35G1Q2M3R5 365 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 SPDYE7PQ495Y7 208 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 DCAF12L1Q5VU92 463 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 TSHZ3Q63HK5 1081 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 TAPT1Q6NXT6 567 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 ERAP2Q6P179 960 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 PGBD2Q6P3X8 592 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 USP17L6PQ6QN14 398 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 LAYNQ6UX15 382 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 GAS2L3Q86XJ1 694 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 SYTL1Q8IYJ3 562 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 ZNF566Q969W8 418 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 KIAA1191Q96A73 305 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 TRIB1Q96RU8 372 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 VKORC1Q9BQB6 163 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 HERPUD2Q9BSE4 406 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 CRB3Q9BUF7 120 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 TLR10Q9BXR5 811 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 STK31Q9BXU1 1019 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 MS4A7Q9GZW8 240 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 TM7SF3Q9NS93 570 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 ETAA1Q9NY74 926 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 FLRT1Q9NZU1 646 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 KCNE5Q9UJ90 142 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 ITGB1BP2Q9UKP3 347 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 AGAP1Q9UPQ3 857 aa4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 USP15Q9Y4E8 981 aaPredicted RBP4.46□□□□□ -1.7
SMCHD1-209ENST00000583441 IGKV2D-30A0A075B6S6 120 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 A0A1B0GTW7 788 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 hCG_1642624A0A1W2PR95 340 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 HARSP12081 509 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 KCNA2P16389 499 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 EEF1GP26641 437 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 ACVR2AP27037 513 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 IL1R2P27930 398 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 LRPAP1P30533 357 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 TRAPPC10P48553 1259 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 HSPA7P48741 367 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 KRTAP10-5P60370 271 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 SLC29A2Q14542 456 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 MGAT5BQ3V5L5 792 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 ANO1Q5XXA6 986 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 METRNLQ641Q3 311 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 UNC13DQ70J99 1090 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 CLNKQ7Z7G1 428 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 TXLNBQ8N3L3 684 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 CCDC150Q8NCX0 1101 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 OR56A3Q8NH54 315 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 CYP2W1Q8TAV3 490 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 LTV1Q96GA3 475 aaPredicted RBP4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 MARS2Q96GW9 593 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 TTLL2Q9BWV7 592 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 STK33Q9BYT3 514 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 MAGEB5Q9BZ81 275 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 CHST8Q9H2A9 424 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 FAM83DQ9H4H8 585 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 CPNE5Q9HCH3 593 aa4.45□□□□□ -1.7
SMCHD1-209ENST00000583441 PTPRHQ9HD43 1115 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms