RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 LEXMQ3ZCV2 418 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 CES5AQ6NT32 575 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 EP400NLQ6ZTU2 488 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 SCML4Q8N228 414 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 TC2NQ8N9U0 490 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 GPR152Q8TDT2 470 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 AGPAT1Q99943 283 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 SLC4A5Q9BY07 1137 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 HAUS4Q9H6D7 363 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 ABHD10Q9NUJ1 306 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 UXTQ9UBK9 157 aaPredicted RBP19.19■□□□□ 0.66
CCDC40-213ENST00000574933 USP3Q9Y6I4 520 aa19.19■□□□□ 0.66
CCDC40-213ENST00000574933 HELZP42694 1942 aaKnown RBP19.19■□□□□ 0.66
CCDC40-213ENST00000574933 FGF19O95750 216 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 SERPING1P05155 500 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 RHOP08100 348 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 SSTR3P32745 418 aaPredicted RBP19.18■□□□□ 0.66
CCDC40-213ENST00000574933 ADKP55263 362 aaKnown RBP19.18■□□□□ 0.66
CCDC40-213ENST00000574933 CDK17Q00537 523 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 SMAD4Q13485 552 aaKnown RBP19.18■□□□□ 0.66
CCDC40-213ENST00000574933 MTMR3Q13615 1198 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 ATAT1Q5SQI0 421 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 TAF3Q5VWG9 929 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 PMF1Q6P1K2 205 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 WDR59Q6PJI9 974 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 GPRIN1Q7Z2K8 1008 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 TMEM35BQ8NCS4 154 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 RIPOR3Q96MK2 946 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 NECTIN4Q96NY8 510 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 FBXO44Q9H4M3 255 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 PIDD1Q9HB75 910 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 IL21Q9HBE4 155 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 WDR6Q9NNW5 1121 aaKnown RBP19.18■□□□□ 0.66
CCDC40-213ENST00000574933 HCFC1R1Q9NWW0 138 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 CYTH4Q9UIA0 394 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 CEP83Q9Y592 693 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 NCANO14594 1321 aa19.18■□□□□ 0.66
CCDC40-213ENST00000574933 MYO10Q9HD67 2058 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 H3BQ06 376 aaPredicted RBP19.17■□□□□ 0.66
CCDC40-213ENST00000574933 GABBR2O75899 941 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 F11P03951 625 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 YWHAQP27348 245 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 ACADSBP45954 432 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 USP46P62068 366 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 NOMO3P69849 1222 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 PRSS36Q5K4E3 855 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 ZNF571Q7Z3V5 609 aaPredicted RBP19.17■□□□□ 0.66
CCDC40-213ENST00000574933 TMEM110Q86TL2 294 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 GPIHBP1Q8IV16 184 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 SCAMP5Q8TAC9 235 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 OVCA2Q8WZ82 227 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 PCDHB18PQ96TA0 734 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 ZNF334Q9HCZ1 680 aaPredicted RBP19.17■□□□□ 0.66
CCDC40-213ENST00000574933 ASAH2Q9NR71 780 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 SCML2Q9UQR0 700 aa19.17■□□□□ 0.66
CCDC40-213ENST00000574933 GRXCR2A6NFK2 248 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 MBTPS2O43462 519 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 SKILP12757 684 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 UNGP13051 313 aaPredicted RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 FECHP22830 423 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PPP3CCP48454 512 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PDCLQ13371 301 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 TAF12Q16514 161 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 TSR1Q2NL82 804 aaKnown RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PUS10Q3MIT2 529 aaKnown RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PABPC1LQ4VXU2 614 aaKnown RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PM20D1Q6GTS8 502 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 CCDC186Q7Z3E2 898 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 GRASPQ7Z6J2 395 aaPredicted RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 TMEM150AQ86TG1 271 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 HS6ST3Q8IZP7 471 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 C1orf131Q8NDD1 294 aaKnown RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 STKLD1Q8NE28 680 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 SLC30A5Q8TAD4 765 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 NOX5Q96PH1 765 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 CORO1BQ9BR76 489 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 APOL5Q9BWW9 433 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PDCL3Q9H2J4 239 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 CNGB3Q9NQW8 809 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 ARHGAP20Q9P2F6 1191 aa19.16■□□□□ 0.66
CCDC40-213ENST00000574933 USP15Q9Y4E8 981 aaPredicted RBP19.16■□□□□ 0.66
CCDC40-213ENST00000574933 PRUNE2Q8WUY3 3088 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 SSU72P8A0A1W2PR75 194 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 SOBPA7XYQ1 873 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 ZNF197O14709 1029 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 MOSPD3O75425 235 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 ZDHHC11BP0C7U3 371 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 GZMAP12544 262 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 TNFAIP3P21580 790 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 CENPCQ03188 943 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 GOLGA8FQ08AF8 430 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 GOLGA8DPQ0D2H9 430 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 MAPK8IP2Q13387 824 aaPredicted RBP19.15■□□□□ 0.66
CCDC40-213ENST00000574933 CLEC16AQ2KHT3 1053 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 CYP4A22Q5TCH4 519 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 SNX30Q5VWJ9 437 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 GAREM2Q75VX8 874 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 PASD1Q8IV76 773 aa19.15■□□□□ 0.66
CCDC40-213ENST00000574933 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.15■□□□□ 0.66
CCDC40-213ENST00000574933 PANX2Q96RD6 677 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms