RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ZNF513Q8N8E2 541 aaPredicted RBP17.34■□□□□ 0.37
CLK3-223ENST00000568488 SLC39A7Q92504 469 aa17.34■□□□□ 0.37
CLK3-223ENST00000568488 ZNF560Q96MR9 790 aa17.34■□□□□ 0.37
CLK3-223ENST00000568488 DCBLD2Q96PD2 775 aa17.34■□□□□ 0.37
CLK3-223ENST00000568488 RNF38Q9H0F5 515 aa17.34■□□□□ 0.37
CLK3-223ENST00000568488 PCOLCE2Q9UKZ9 415 aa17.34■□□□□ 0.37
CLK3-223ENST00000568488 CPQQ9Y646 472 aa17.34■□□□□ 0.37
CLK3-223ENST00000568488 PLXND1Q9Y4D7 1925 aa17.33■□□□□ 0.37
CLK3-223ENST00000568488 HUS1O60921 280 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 SLC12A3P55017 1021 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 GRIK2Q13002 908 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 IL17AQ16552 155 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 TRMT11Q7Z4G4 463 aaKnown RBP17.33■□□□□ 0.36
CLK3-223ENST00000568488 PRDM16Q9HAZ2 1276 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 KIAA1522Q9P206 1035 aaPredicted RBP17.33■□□□□ 0.36
CLK3-223ENST00000568488 CFAP97Q9P2B7 532 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 DKK4Q9UBT3 224 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 SUSD2Q9UGT4 822 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 L1RE1Q9UN81 338 aa17.33■□□□□ 0.36
CLK3-223ENST00000568488 ANAPC1Q9H1A4 1944 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 ANKRD63C9JTQ0 380 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 HCRTO43612 131 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 CBFA2T3O75081 653 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 ZNF217O75362 1048 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 GRIK1P39086 918 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 CFAP221Q4G0U5 840 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 LY6G5CQ5SRR4 150 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 GLRX5Q86SX6 157 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 SCUBE3Q8IX30 993 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 PIP4K2CQ8TBX8 421 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 CDK5RAP3Q96JB5 506 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 PKMYT1Q99640 499 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 ZHX3Q9H4I2 956 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 KCND2Q9NZV8 630 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 AGAP1Q9UPQ3 857 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 PCDHB6Q9Y5E3 794 aa17.32■□□□□ 0.36
CLK3-223ENST00000568488 A0A087WV48 116 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 TISP43B9A030 160 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 FAM13AO94988 1023 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 PFKLP17858 780 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 POLR2BP30876 1174 aaKnown RBP17.31■□□□□ 0.36
CLK3-223ENST00000568488 NTSR1P30989 418 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 PNPLA4P41247 253 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 ABCG1P45844 678 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 USP46P62068 366 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 SLC7A9P82251 487 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 GAD2Q05329 585 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 DHX8Q14562 1220 aaKnown RBP17.31■□□□□ 0.36
CLK3-223ENST00000568488 ARSHQ5FYA8 562 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 WDR45BQ5MNZ6 344 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 C10orf76Q5T2E6 689 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 BTBD8Q5XKL5 378 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 SDE2Q6IQ49 451 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 NUDT18Q6ZVK8 323 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 ZNF605Q86T29 641 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 OSTM1Q86WC4 334 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 ZNF419Q96HQ0 510 aaPredicted RBP17.31■□□□□ 0.36
CLK3-223ENST00000568488 ZDHHC5Q9C0B5 715 aa17.31■□□□□ 0.36
CLK3-223ENST00000568488 MAGEC2Q9UBF1 373 aaPredicted RBP17.31■□□□□ 0.36
CLK3-223ENST00000568488 AGO2Q9UKV8 859 aaKnown RBP17.31■□□□□ 0.36
CLK3-223ENST00000568488 PTPRBP23467 1997 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 FAM149AA5PLN7 773 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 TRAK2O60296 914 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 C1QL1O75973 258 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 ITGB3P05106 788 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 ATXN1LP0C7T5 689 aaKnown RBP17.3■□□□□ 0.36
CLK3-223ENST00000568488 NDUFV2P19404 249 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 TFAMQ00059 246 aaKnown RBP17.3■□□□□ 0.36
CLK3-223ENST00000568488 DENND5BQ6ZUT9 1274 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 TMEM86AQ8N2M4 240 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 PHTF2Q8N3S3 785 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 KCNV2Q8TDN2 545 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 FOXJ1Q92949 421 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 FUBP3Q96I24 572 aaKnown RBP eCLIP17.3■□□□□ 0.36
CLK3-223ENST00000568488 REEP2Q9BRK0 252 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 IL21RQ9HBE5 538 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 DEC1Q9P2X7 70 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 SNX9Q9Y5X1 595 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 MYOFQ9NZM1 2061 aa17.3■□□□□ 0.36
CLK3-223ENST00000568488 SHROOM3Q8TF72 1996 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 MYO18AQ92614 2054 aaKnown RBP17.29■□□□□ 0.36
CLK3-223ENST00000568488 A0A1W2PQF6 199 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 ZNF840PA6NDX5 716 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 ATP2C2O75185 946 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 MBL2P11226 248 aaPredicted RBP17.29■□□□□ 0.36
CLK3-223ENST00000568488 PLA2G2AP14555 144 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 SCP2P22307 547 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 BDNFP23560 247 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 ANXA13P27216 316 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 PCSK1P29120 753 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 MAGEA11P43364 429 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 LHX1P48742 406 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 TOB1P50616 345 aaPredicted RBP17.29■□□□□ 0.36
CLK3-223ENST00000568488 PREPLQ4J6C6 727 aaPredicted RBP17.29■□□□□ 0.36
CLK3-223ENST00000568488 CCDC157Q569K6 752 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 SLFN12LQ6IEE8 588 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 C4orf50Q6ZRC1 276 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 CHPFQ8IZ52 775 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 ADGRF2Q8IZF7 708 aa17.29■□□□□ 0.36
CLK3-223ENST00000568488 GALNT15Q8N3T1 639 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms