RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NFATC1O95644 943 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 OLFM2O95897 454 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 BIRC3Q13489 604 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 ADGRG2Q8IZP9 1017 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 KIAA1958Q8N8K9 716 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 RPLP0P6Q8NHW5 317 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 SLITRK1Q96PX8 696 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 KCTD10Q9H3F6 313 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 SMYD3Q9H7B4 428 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 EXOC1Q9NV70 894 aa17.11■□□□□ 0.33
CLN3-229ENST00000567963 A0A1B0GVL5 298 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 PDXKO00764 312 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 ABL1P00519 1130 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 OAS1P00973 400 aaKnown RBP17.1■□□□□ 0.33
CLN3-229ENST00000567963 PFKFB1P16118 471 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 CMA1P23946 247 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 NCOA4Q13772 614 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 ZNF699Q32M78 642 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 ZNF667Q5HYK9 610 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 PRR23CQ6ZRP0 262 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 SYT13Q7L8C5 426 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 NUP93Q8N1F7 819 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 KCNK16Q96T55 309 aa17.1■□□□□ 0.33
CLN3-229ENST00000567963 MYO16Q9Y6X6 1858 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 EML5Q05BV3 1969 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 DCDC2BA2VCK2 349 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 VNN1O95497 513 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 MYL1P05976 194 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 RAP1GAPP47736 663 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 DLG4P78352 724 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 IFRD2Q12894 506 aaPredicted RBP17.09■□□□□ 0.33
CLN3-229ENST00000567963 PAQR9Q6ZVX9 377 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 CACNA2D4Q7Z3S7 1137 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 NETO1Q8TDF5 533 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 ELMO3Q96BJ8 720 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 TNIP3Q96KP6 325 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 USP25Q9UHP3 1055 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 HPSEQ9Y251 543 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 CPQQ9Y646 472 aa17.09■□□□□ 0.33
CLN3-229ENST00000567963 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.08■□□□□ 0.32
CLN3-229ENST00000567963 AXIN1O15169 862 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 FOXD2O60548 495 aaPredicted RBP17.08■□□□□ 0.32
CLN3-229ENST00000567963 RTN3O95197 1032 aaPredicted RBP17.08■□□□□ 0.32
CLN3-229ENST00000567963 CCDC192P0DO97 292 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 YWHAQP27348 245 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 OPRD1P41143 372 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 SGSM1Q2NKQ1 1148 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 GAB4Q2WGN9 574 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 FILIP1Q7Z7B0 1213 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 KBTBD6Q86V97 674 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 CCDC26Q8TAB7 109 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 OVCA2Q8WZ82 227 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 LOXL4Q96JB6 756 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 HHIPQ96QV1 700 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 SDCBP2Q9H190 292 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 SMPD4Q9NXE4 827 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 SPAG17Q6Q759 2223 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 KIAA1549LQ6ZVL6 1849 aa17.08■□□□□ 0.32
CLN3-229ENST00000567963 K7EQS6 105 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 TNFRSF10BO14763 440 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 AKAP3O75969 853 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 NR3C1P04150 777 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 DMC1Q14565 340 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 ZACNQ401N2 412 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 PDZD8Q8NEN9 1154 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 SCAMP5Q8TAC9 235 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 TMC2Q8TDI7 906 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 FBXO32Q969P5 355 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 ACDQ96AP0 544 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 ZC3H10Q96K80 434 aaKnown RBP17.07■□□□□ 0.32
CLN3-229ENST00000567963 SPATA32Q96LK8 384 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 MED10Q9BTT4 135 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 ARRDC1-AS1Q9H2J1 176 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 EBF1Q9UH73 591 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 CHORDC1Q9UHD1 332 aaPredicted RBP17.07■□□□□ 0.32
CLN3-229ENST00000567963 SDK1Q7Z5N4 2213 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 ATP8B3O60423 1300 aa17.07■□□□□ 0.32
CLN3-229ENST00000567963 LAMA1P25391 3075 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 SLC9A3R1O14745 358 aaPredicted RBP17.06■□□□□ 0.32
CLN3-229ENST00000567963 SLC30A4O14863 429 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 IKBKBO14920 756 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 GDF9O60383 454 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 CLSTN1O94985 981 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 RPN1P04843 607 aaKnown RBP17.06■□□□□ 0.32
CLN3-229ENST00000567963 CYP17A1P05093 508 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 MBL2P11226 248 aaPredicted RBP17.06■□□□□ 0.32
CLN3-229ENST00000567963 DHCR24Q15392 516 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 SNX30Q5VWJ9 437 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 SCARA5Q6ZMJ2 495 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 SV2AQ7L0J3 742 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 ACOT1Q86TX2 421 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 FAM35AQ86V20 835 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 SMARCD1Q96GM5 515 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 CHAMP1Q96JM3 812 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 IL37Q9NZH6 218 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 CFAP97Q9P2B7 532 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 TRAF3IP3Q9Y228 551 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 ZDHHC9Q9Y397 364 aa17.06■□□□□ 0.32
CLN3-229ENST00000567963 COCHO43405 550 aa17.05■□□□□ 0.32
CLN3-229ENST00000567963 EPN2O95208 641 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms