RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 FAM35AQ86V20 835 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 FUKQ8N0W3 1084 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 FMR1NBQ8N0W7 255 aaPredicted RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 CCDC47Q96A33 483 aaKnown RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 LINC00597Q9H2U6 94 aa11.51□□□□□ -0.57
VPS39-208ENST00000564994 APOBEC3GQ9HC16 384 aaKnown RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS39-208ENST00000564994 DUS2Q9NX74 493 aaKnown RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 SMG5Q9UPR3 1016 aaKnown RBP11.51□□□□□ -0.57
VPS39-208ENST00000564994 CHURC1-FNTBB4DL54 471 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 LEFTY2O00292 366 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 TNFRSF10BO14763 440 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 BEST1O76090 585 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 KIF20AO95235 890 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 OAS1P00973 400 aaKnown RBP11.5□□□□□ -0.57
VPS39-208ENST00000564994 EGFP01133 1207 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 CCDC130P13994 396 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 PFKLP17858 780 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 PIK3CAP42336 1068 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 GCLMP48507 274 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 IFNAR2P48551 515 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 FNTBP49356 437 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 NDST1P52848 882 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 NRLP54845 237 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 SLC7A9P82251 487 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 SRSF5Q13243 272 aaKnown RBP11.5□□□□□ -0.57
VPS39-208ENST00000564994 ADAM9Q13443 819 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 PNOCQ13519 176 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 PPP2R5DQ14738 602 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 INTS8Q75QN2 995 aaKnown RBP11.5□□□□□ -0.57
VPS39-208ENST00000564994 FAM186BQ8IYM0 893 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 KIAA2013Q8IYS2 634 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 NUP93Q8N1F7 819 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 CRYBG2Q8N1P7 616 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 SYNPOQ8N3V7 929 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 CPA6Q8N4T0 437 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 C12orf29Q8N999 325 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 ZMIZ2Q8NF64 920 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 SCAMP5Q8TAC9 235 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 TAS1R2Q8TE23 839 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 TAF4BQ92750 862 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 EZH1Q92800 747 aaPredicted RBP11.5□□□□□ -0.57
VPS39-208ENST00000564994 EEF2KMTQ96G04 330 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 TNIP3Q96KP6 325 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 TWNKQ96RR1 684 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 HINFPQ9BQA5 517 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 MED10Q9BTT4 135 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 POLR3BQ9NW08 1133 aaPredicted RBP11.5□□□□□ -0.57
VPS39-208ENST00000564994 EHD2Q9NZN4 543 aa11.5□□□□□ -0.57
VPS39-208ENST00000564994 MYO18AQ92614 2054 aaKnown RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 SCAMP3O14828 347 aaKnown RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 HRO43593 1189 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 RNF40O75150 1001 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 AP1G2O75843 785 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 ABL1P00519 1130 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 P4HA1P13674 534 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 YWHAQP27348 245 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 PSMC2P35998 433 aaKnown RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 PPP3CCP48454 512 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 PDE6CP51160 858 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 SLC5A3P53794 718 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 MCCD1P59942 119 aaPredicted RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 GRSF1Q12849 480 aaKnown RBP eCLIP11.49□□□□□ -0.57
VPS39-208ENST00000564994 LPAL2Q16609 132 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 GAB4Q2WGN9 574 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 ENGASEQ8NFI3 743 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 SLC2A14Q8TDB8 520 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 ERCC4Q92889 916 aaPredicted RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 ATP2A3Q93084 1043 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 SMARCD1Q96GM5 515 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 SLITRK1Q96PX8 696 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 SMOQ99835 787 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 P2RY13Q9BPV8 354 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 MMRN2Q9H8L6 949 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 DMAP1Q9NPF5 467 aaPredicted RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 SMPD4Q9NXE4 827 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 IL37Q9NZH6 218 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 NCDNQ9UBB6 729 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 CHORDC1Q9UHD1 332 aaPredicted RBP11.49□□□□□ -0.57
VPS39-208ENST00000564994 CPQQ9Y646 472 aa11.49□□□□□ -0.57
VPS39-208ENST00000564994 FAM92AA1XBS5 289 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 ANTXRLA6NF34 631 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 RTN3O95197 1032 aaPredicted RBP11.48□□□□□ -0.57
VPS39-208ENST00000564994 DRD1P21728 446 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 TGM1P22735 817 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 RPL13P26373 211 aaKnown RBP11.48□□□□□ -0.57
VPS39-208ENST00000564994 ID4P47928 161 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 PGFP49763 221 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 AMPD2Q01433 879 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 ENPEPQ07075 957 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 INCA1Q0VD86 236 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 BECN1Q14457 450 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 EDRF1Q3B7T1 1238 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 HEATR6Q6AI08 1181 aaKnown RBP11.48□□□□□ -0.57
VPS39-208ENST00000564994 FILIP1Q7Z7B0 1213 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 LONP2Q86WA8 852 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 UNC93AQ86WB7 457 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 WHAMMQ8TF30 809 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 SEMA4DQ92854 862 aa11.48□□□□□ -0.57
VPS39-208ENST00000564994 FBXO32Q969P5 355 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms