RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SLC8A3P57103 927 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 USP46P62068 366 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 IFRD2Q12894 506 aaPredicted RBP14.18□□□□□ -0.14
CLK3-213ENST00000563842 TAF10Q12962 218 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 ZNF394Q53GI3 561 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 CC2D1AQ6P1N0 951 aaPredicted RBP14.18□□□□□ -0.14
CLK3-213ENST00000563842 CREBRFQ8IUR6 639 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 GPIHBP1Q8IV16 184 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 TMEM105Q8N8V8 129 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 PJA1Q8NG27 643 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 USP13Q92995 863 aaPredicted RBP14.18□□□□□ -0.14
CLK3-213ENST00000563842 TWNKQ96RR1 684 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 DDX23Q9BUQ8 820 aaKnown RBP14.18□□□□□ -0.14
CLK3-213ENST00000563842 C8orf33Q9H7E9 229 aaPredicted RBP14.18□□□□□ -0.14
CLK3-213ENST00000563842 HEBP1Q9NRV9 189 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 COL4A2P08572 1712 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 NCANO14594 1321 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 CACNA1IQ9P0X4 2223 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 ZNF840PA6NDX5 716 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 TNFRSF10BO14763 440 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 GALR2O43603 387 aaPredicted RBP14.17□□□□□ -0.14
CLK3-213ENST00000563842 ABL1P00519 1130 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 PRKCSHP14314 528 aaPredicted RBP14.17□□□□□ -0.14
CLK3-213ENST00000563842 TCF3P15923 654 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 KPNA1P52294 538 aaPredicted RBP14.17□□□□□ -0.14
CLK3-213ENST00000563842 SLC5A3P53794 718 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 MAP3K7CLP57077 242 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 LRMPQ12912 555 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 UBXN2BQ14CS0 331 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 ARL14EPQ8N8R7 260 aaPredicted RBP14.17□□□□□ -0.14
CLK3-213ENST00000563842 EHBP1Q8NDI1 1231 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 RSPRY1Q96DX4 576 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 CNOT6LQ96LI5 555 aaKnown RBP14.17□□□□□ -0.14
CLK3-213ENST00000563842 FAM81BQ96LP2 452 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 SMOQ99835 787 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 DUSP16Q9BY84 665 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 LTB4R2Q9NPC1 389 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 TMEM30AQ9NV96 361 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 IL37Q9NZH6 218 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 GCNT4Q9P109 453 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 KIAA1257Q9ULG3 409 aa14.17□□□□□ -0.14
CLK3-213ENST00000563842 CACNA1HO95180 2353 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 FAM92AA1XBS5 289 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 C2orf78A6NCI8 922 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 ARNTLO00327 626 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 PI15O43692 258 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 MTIF2P46199 727 aaKnown RBP14.16□□□□□ -0.14
CLK3-213ENST00000563842 RAD23BP54727 409 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 AMPD2Q01433 879 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 PDGFRLQ15198 375 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 PPP1R26Q5T8A7 1209 aaPredicted RBP14.16□□□□□ -0.14
CLK3-213ENST00000563842 IER5LQ5T953 404 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 SNX30Q5VWJ9 437 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 ARHGAP17Q68EM7 881 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 CLEC20AQ6ZU45 233 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 DDX42Q86XP3 938 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLK3-213ENST00000563842 CCDC105Q8IYK2 499 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 PPM1KQ8N3J5 372 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 KIAA1958Q8N8K9 716 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 SLC4A11Q8NBS3 891 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 ZMIZ2Q8NF64 920 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 CYP2S1Q96SQ9 504 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 ARID3AQ99856 593 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 UBXN6Q9BZV1 441 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 SMG9Q9H0W8 520 aaKnown RBP14.16□□□□□ -0.14
CLK3-213ENST00000563842 THAP9Q9H5L6 903 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 TLR8Q9NR97 1041 aaKnown RBP14.16□□□□□ -0.14
CLK3-213ENST00000563842 GKN1Q9NS71 199 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 ARHGAP26Q9UNA1 814 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 PIAS3Q9Y6X2 628 aa14.16□□□□□ -0.14
CLK3-213ENST00000563842 FAM170BA6NMN3 283 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 BEST1O76090 585 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 PAEPP09466 180 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 VDRP11473 427 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 TUBP50607 506 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 SLC7A9P82251 487 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 GCNT1Q02742 428 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 MTF1Q14872 753 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 ITPRIPL2Q3MIP1 535 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 DPCR1Q3MIW9 517 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 SGO2Q562F6 1265 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 HECTD3Q5T447 861 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 RALGPS2Q86X27 583 aaPredicted RBP14.15□□□□□ -0.14
CLK3-213ENST00000563842 DTWD2Q8NBA8 298 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 SCAMP5Q8TAC9 235 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 LMO3Q8TAP4 145 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 GPT2Q8TD30 523 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 FAM3CQ92520 227 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 EXOC4Q96A65 974 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 JAKMIP2Q96AA8 810 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 LRRC3BQ96PB8 259 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 FOXQ1Q9C009 403 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 HESX1Q9UBX0 185 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 CHORDC1Q9UHD1 332 aaPredicted RBP14.15□□□□□ -0.14
CLK3-213ENST00000563842 CCL26Q9Y258 94 aa14.15□□□□□ -0.14
CLK3-213ENST00000563842 MYOFQ9NZM1 2061 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 GTPBP10A4D1E9 387 aaKnown RBP14.14□□□□□ -0.15
CLK3-213ENST00000563842 OLFM2O95897 454 aa14.14□□□□□ -0.15
CLK3-213ENST00000563842 OAS1P00973 400 aaKnown RBP14.14□□□□□ -0.15
CLK3-213ENST00000563842 DCNP07585 359 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms