RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TRIM49P0CI25 452 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 TRIM49CP0CI26 452 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 TCF3P15923 654 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 PFKLP17858 780 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 RPL13P26373 211 aaKnown RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 YWHAQP27348 245 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 HOXC13P31276 330 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 GJA4P35212 333 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 PIK3CAP42336 1068 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 ASPAP45381 313 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 GCLMP48507 274 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 PDE6CP51160 858 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 NDST1P52848 882 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 SLC7A9P82251 487 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 AMPD2Q01433 879 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 PPP3CAQ08209 521 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 ORC1Q13415 861 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 PNOCQ13519 176 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 BECN1Q14457 450 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 EML3Q32P44 896 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 ZCWPW2Q504Y3 356 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 NAIF1Q69YI7 327 aaPredicted RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 INTS8Q75QN2 995 aaKnown RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 FAM186BQ8IYM0 893 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 SMYD4Q8IYR2 804 aaPredicted RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 FUKQ8N0W3 1084 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 CRYBG2Q8N1P7 616 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 CPA6Q8N4T0 437 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 SCAMP5Q8TAC9 235 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 TAF4BQ92750 862 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 ATP2A3Q93084 1043 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 MED10Q9BTT4 135 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 APOBEC3GQ9HC16 384 aaKnown RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 HMGXB4Q9UGU5 601 aa10.93□□□□□ -0.66
CLK3-205ENST00000561673 CHORDC1Q9UHD1 332 aaPredicted RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 SMG5Q9UPR3 1016 aaKnown RBP10.93□□□□□ -0.66
CLK3-205ENST00000561673 ATP8B3O60423 1300 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 CHURC1-FNTBB4DL54 471 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 TNFRSF10BO14763 440 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 HRO43593 1189 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 BEST1O76090 585 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 RTN3O95197 1032 aaPredicted RBP10.92□□□□□ -0.66
CLK3-205ENST00000561673 OAS1P00973 400 aaKnown RBP10.92□□□□□ -0.66
CLK3-205ENST00000561673 EGFP01133 1207 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 KRT13P13646 458 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 CCDC130P13994 396 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 PSMC2P35998 433 aaKnown RBP10.92□□□□□ -0.66
CLK3-205ENST00000561673 IFNAR2P48551 515 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 FNTBP49356 437 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 MCCD1P59942 119 aaPredicted RBP10.92□□□□□ -0.66
CLK3-205ENST00000561673 ENPEPQ07075 957 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 IFRD2Q12894 506 aaPredicted RBP10.92□□□□□ -0.66
CLK3-205ENST00000561673 PKN3Q6P5Z2 889 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 FAM35AQ86V20 835 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 UNC93AQ86WB7 457 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 C12orf29Q8N999 325 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 ENGASEQ8NFI3 743 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 SLC2A14Q8TDB8 520 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 TAS1R2Q8TE23 839 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 EEF2KMTQ96G04 330 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 SMARCD1Q96GM5 515 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 CCDC34Q96HJ3 373 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 SLITRK1Q96PX8 696 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 SMOQ99835 787 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 P2RY13Q9BPV8 354 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 IL37Q9NZH6 218 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 SPTBN4Q9H254 2564 aa10.92□□□□□ -0.66
CLK3-205ENST00000561673 GPR179Q6PRD1 2367 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 FANCMQ8IYD8 2048 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 GOLGA6L4A6NEF3 574 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 AP1G2O75843 785 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 OLFM2O95897 454 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 DRD1P21728 446 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 HOXA6P31267 233 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 PRCPP42785 496 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 ID4P47928 161 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 SLC5A3P53794 718 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 NUCB2P80303 420 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 NR1H3Q13133 447 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 LPAL2Q16609 132 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 EDRF1Q3B7T1 1238 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 SNX30Q5VWJ9 437 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 HEATR6Q6AI08 1181 aaKnown RBP10.91□□□□□ -0.66
CLK3-205ENST00000561673 LONP2Q86WA8 852 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 ADGRG2Q8IZP9 1017 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 ZMIZ2Q8NF64 920 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 OVCA2Q8WZ82 227 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 CD101Q93033 1021 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 FBXO32Q969P5 355 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 TWNKQ96RR1 684 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 MMRN2Q9H8L6 949 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 TMEM8AQ9HCN3 771 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 CSNK1G1Q9HCP0 422 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 DMAP1Q9NPF5 467 aaPredicted RBP10.91□□□□□ -0.66
CLK3-205ENST00000561673 KRT82Q9NSB4 513 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 POLR3BQ9NW08 1133 aaPredicted RBP10.91□□□□□ -0.66
CLK3-205ENST00000561673 SMPD4Q9NXE4 827 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 NCDNQ9UBB6 729 aa10.91□□□□□ -0.66
CLK3-205ENST00000561673 FARP1Q9Y4F1 1045 aaPredicted RBP10.91□□□□□ -0.66
CLK3-205ENST00000561673 CPQQ9Y646 472 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms