RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 GHITMQ9H3K2 345 aa8.8□□□□□ -1
USP3-211ENST00000559257 UCK1Q9HA47 277 aa8.8□□□□□ -1
USP3-211ENST00000559257 LRRC4CQ9HCJ2 640 aa8.8□□□□□ -1
USP3-211ENST00000559257 PCDH12Q9NPG4 1184 aa8.8□□□□□ -1
USP3-211ENST00000559257 CPSF3Q9UKF6 684 aaKnown RBP8.8□□□□□ -1
USP3-211ENST00000559257 MAST3O60307 1309 aa8.79□□□□□ -1
USP3-211ENST00000559257 MED23Q9ULK4 1368 aa8.79□□□□□ -1
USP3-211ENST00000559257 ITSN1Q15811 1721 aa8.79□□□□□ -1
USP3-211ENST00000559257 TMEM120BA0PK00 339 aa8.79□□□□□ -1
USP3-211ENST00000559257 CAPN8A6NHC0 703 aa8.79□□□□□ -1
USP3-211ENST00000559257 ZNF839A8K0R7 811 aa8.79□□□□□ -1
USP3-211ENST00000559257 C6orf222P0C671 652 aaPredicted RBP8.79□□□□□ -1
USP3-211ENST00000559257 SRGAP2CP0DJJ0 459 aa8.79□□□□□ -1
USP3-211ENST00000559257 TAC1P20366 129 aa8.79□□□□□ -1
USP3-211ENST00000559257 FDFT1P37268 417 aa8.79□□□□□ -1
USP3-211ENST00000559257 BTDP43251 543 aa8.79□□□□□ -1
USP3-211ENST00000559257 NKX2-5P52952 324 aaPredicted RBP8.79□□□□□ -1
USP3-211ENST00000559257 AQP4P55087 323 aa8.79□□□□□ -1
USP3-211ENST00000559257 NCKAP1LP55160 1127 aa8.79□□□□□ -1
USP3-211ENST00000559257 GALK2Q01415 458 aa8.79□□□□□ -1
USP3-211ENST00000559257 STX3Q13277 289 aa8.79□□□□□ -1
USP3-211ENST00000559257 AP3B2Q13367 1082 aa8.79□□□□□ -1
USP3-211ENST00000559257 TRPC3Q13507 836 aa8.79□□□□□ -1
USP3-211ENST00000559257 TAF1BQ53T94 588 aaPredicted RBP8.79□□□□□ -1
USP3-211ENST00000559257 BNC2Q6ZN30 1099 aaPredicted RBP8.79□□□□□ -1
USP3-211ENST00000559257 ARHGAP36Q6ZRI8 547 aa8.79□□□□□ -1
USP3-211ENST00000559257 HAUS6Q7Z4H7 955 aa8.79□□□□□ -1
USP3-211ENST00000559257 NKAIN4Q8IVV8 208 aa8.79□□□□□ -1
USP3-211ENST00000559257 ZNF34Q8IZ26 560 aa8.79□□□□□ -1
USP3-211ENST00000559257 C10orf82Q8WW14 230 aa8.79□□□□□ -1
USP3-211ENST00000559257 NSL1Q96IY1 281 aa8.79□□□□□ -1
USP3-211ENST00000559257 ARL5BQ96KC2 179 aa8.79□□□□□ -1
USP3-211ENST00000559257 COG8Q96MW5 612 aa8.79□□□□□ -1
USP3-211ENST00000559257 NACC1Q96RE7 527 aa8.79□□□□□ -1
USP3-211ENST00000559257 GAL3ST1Q99999 423 aa8.79□□□□□ -1
USP3-211ENST00000559257 TRIM8Q9BZR9 551 aa8.79□□□□□ -1
USP3-211ENST00000559257 USP44Q9H0E7 712 aa8.79□□□□□ -1
USP3-211ENST00000559257 TIGARQ9NQ88 270 aa8.79□□□□□ -1
USP3-211ENST00000559257 GIMAP4Q9NUV9 329 aa8.79□□□□□ -1
USP3-211ENST00000559257 RIC8BQ9NVN3 520 aa8.79□□□□□ -1
USP3-211ENST00000559257 TRPM5Q9NZQ8 1165 aa8.79□□□□□ -1
USP3-211ENST00000559257 DAPK2Q9UIK4 370 aa8.79□□□□□ -1
USP3-211ENST00000559257 VWA7Q9Y334 891 aa8.79□□□□□ -1
USP3-211ENST00000559257 PCDHA13Q9Y5I0 950 aa8.79□□□□□ -1
USP3-211ENST00000559257 MAU2Q9Y6X3 613 aa8.79□□□□□ -1
USP3-211ENST00000559257 DNAJB5O75953 348 aa8.78□□□□□ -1
USP3-211ENST00000559257 ITGA2P17301 1181 aa8.78□□□□□ -1
USP3-211ENST00000559257 AMPD1P23109 780 aa8.78□□□□□ -1
USP3-211ENST00000559257 PMLP29590 882 aa8.78□□□□□ -1
USP3-211ENST00000559257 RFC1P35251 1148 aaPredicted RBP8.78□□□□□ -1
USP3-211ENST00000559257 TALDO1P37837 337 aa8.78□□□□□ -1
USP3-211ENST00000559257 OR3A3P47888 321 aa8.78□□□□□ -1
USP3-211ENST00000559257 AUHQ13825 339 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 TFDP1Q14186 410 aa8.78□□□□□ -1
USP3-211ENST00000559257 SELPLGQ14242 412 aa8.78□□□□□ -1
USP3-211ENST00000559257 ALX1Q15699 326 aa8.78□□□□□ -1
USP3-211ENST00000559257 TBRG1Q3YBR2 411 aa8.78□□□□□ -1
USP3-211ENST00000559257 EARS2Q5JPH6 523 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 FAM209BQ5JX69 171 aa8.78□□□□□ -1
USP3-211ENST00000559257 SNAP47Q5SQN1 464 aa8.78□□□□□ -1
USP3-211ENST00000559257 ATAD3BQ5T9A4 648 aa8.78□□□□□ -1
USP3-211ENST00000559257 FAM91A1Q658Y4 838 aa8.78□□□□□ -1
USP3-211ENST00000559257 ITPRIPL1Q6GPH6 555 aa8.78□□□□□ -1
USP3-211ENST00000559257 VSTM1Q6UX27 236 aa8.78□□□□□ -1
USP3-211ENST00000559257 CLNKQ7Z7G1 428 aa8.78□□□□□ -1
USP3-211ENST00000559257 TTC7BQ86TV6 843 aa8.78□□□□□ -1
USP3-211ENST00000559257 RNF135Q8IUD6 432 aa8.78□□□□□ -1
USP3-211ENST00000559257 KSR1Q8IVT5 923 aa8.78□□□□□ -1
USP3-211ENST00000559257 ZNF565Q8N9K5 539 aa8.78□□□□□ -1
USP3-211ENST00000559257 NCOA7Q8NI08 942 aa8.78□□□□□ -1
USP3-211ENST00000559257 ZNF420Q8TAQ5 688 aaPredicted RBP8.78□□□□□ -1
USP3-211ENST00000559257 DDX54Q8TDD1 881 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 PSPC1Q8WXF1 523 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 MTBPQ96DY7 904 aa8.78□□□□□ -1
USP3-211ENST00000559257 PSMB7Q99436 277 aa8.78□□□□□ -1
USP3-211ENST00000559257 TMEM79Q9BSE2 394 aa8.78□□□□□ -1
USP3-211ENST00000559257 SLA2Q9H6Q3 261 aa8.78□□□□□ -1
USP3-211ENST00000559257 NARFLQ9H6Q4 476 aa8.78□□□□□ -1
USP3-211ENST00000559257 MLXIPQ9HAP2 919 aa8.78□□□□□ -1
USP3-211ENST00000559257 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.78□□□□□ -12e-6■■■□□ 18.4
USP3-211ENST00000559257 SPC25Q9HBM1 224 aa8.78□□□□□ -1
USP3-211ENST00000559257 CYP4F12Q9HCS2 524 aa8.78□□□□□ -1
USP3-211ENST00000559257 INTS7Q9NVH2 962 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 SENP1Q9P0U3 644 aa8.78□□□□□ -1
USP3-211ENST00000559257 RNF112Q9ULX5 631 aa8.78□□□□□ -1
USP3-211ENST00000559257 NEU2Q9Y3R4 380 aa8.78□□□□□ -1
USP3-211ENST00000559257 HEMK1Q9Y5R4 338 aaPredicted RBP8.78□□□□□ -1
USP3-211ENST00000559257 MON2Q7Z3U7 1717 aa8.78□□□□□ -1
USP3-211ENST00000559257 MAP2P11137 1827 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 POTEB3A0JP26 581 aa8.78□□□□□ -1
USP3-211ENST00000559257 NBPF26B4DH59 902 aa8.78□□□□□ -1
USP3-211ENST00000559257 UBAP1LF5GYI3 381 aa8.78□□□□□ -1
USP3-211ENST00000559257 TOM1O60784 492 aa8.78□□□□□ -1
USP3-211ENST00000559257 ATG7O95352 703 aa8.78□□□□□ -1
USP3-211ENST00000559257 RPS17P08708 135 aaKnown RBP8.78□□□□□ -1
USP3-211ENST00000559257 FAM58BPP0C7Q3 252 aa8.78□□□□□ -1
USP3-211ENST00000559257 ATP6V1B1P15313 513 aa8.78□□□□□ -1
USP3-211ENST00000559257 NR4A1P22736 598 aa8.78□□□□□ -1
USP3-211ENST00000559257 PTX3P26022 381 aaPredicted RBP8.78□□□□□ -1
USP3-211ENST00000559257 RPA1P27694 616 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms