RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PDCD2Q16342 344 aaPredicted RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 MTHFD1LQ6UB35 978 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 UNC5BQ8IZJ1 945 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 BANPQ8N9N5 519 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 GDPD5Q8WTR4 605 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 SLCO2A1Q92959 643 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 OPTNQ96CV9 577 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 PTCD3Q96EY7 689 aaKnown RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 CEP41Q9BYV8 373 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 PHACTR1Q9C0D0 580 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 GRIP2Q9C0E4 1043 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 ANLNQ9NQW6 1124 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 ASTN2O75129 1339 aaPredicted RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 hCG_1818297A0A087WSY0 165 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 CAPN8A6NHC0 703 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 POLRMTO00411 1230 aaKnown RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 AIM2O14862 343 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 VIL1P09327 827 aaKnown RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 DLDP09622 509 aaKnown RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 RARBP10826 455 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 KRT3P12035 628 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 USP46P62068 366 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 GTF2BQ00403 316 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 PTAR1Q7Z6K3 402 aaPredicted RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 HPS6Q86YV9 775 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 TMPRSS6Q8IU80 811 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 NGRNQ9NPE2 291 aaKnown RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 DNAJC16Q9Y2G8 782 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 ASB3Q9Y575 518 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 MYH9P35579 1960 aaKnown RBP11.81□□□□□ -0.52
LDLR-208ENST00000558518 ZNF536O15090 1300 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 SYNJ2BP-COX16A0A087WUM0 186 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 E9PBE3 544 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 K7ERI5 159 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 MAGEB2O15479 319 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 KLHL41O60662 606 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 ABHD2P08910 425 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 GSTA2P09210 222 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 SRGAP2CP0DJJ0 459 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 CDH8P55286 799 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 OCRLQ01968 901 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 MAP7Q14244 749 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 LIN52Q52LA3 116 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 SFT2D3Q587I9 215 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 CES3Q6UWW8 571 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 EEPD1Q7L9B9 569 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 DEFB107AQ8IZN7 70 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 MTMR12Q9C0I1 747 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 KCNK13Q9HB14 408 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 GALNT8Q9NY28 637 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 COX16Q9P0S2 106 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 ZNF212Q9UDV6 495 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 FBXO40Q9UH90 709 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 ARFGEF1Q9Y6D6 1849 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 CST3P01034 146 aaPredicted RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 PDE1BQ01064 536 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 STX3Q13277 289 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 EFHC2Q5JST6 749 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 SLC27A3Q5K4L6 730 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 CC2D2BQ6DHV5 1058 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 NXNQ6DKJ4 435 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 IL31Q6EBC2 164 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 ANO5Q75V66 913 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 GSDMBQ8TAX9 411 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 PGLYRP2Q96PD5 576 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 TMEM39BQ9GZU3 492 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 WWP1Q9H0M0 922 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 NOP56O00567 594 aaKnown RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 KRT37O76014 449 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 RAG1P15918 1043 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 RPS6P62753 249 aaKnown RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 KRT81Q14533 505 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 RAB6CQ53S08 254 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 SH3PXD2AQ5TCZ1 1133 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.8□□□□□ -0.522e-7■□□□□ 10.3
LDLR-208ENST00000558518 FAM81AQ8TBF8 368 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 DEPDC1BQ8WUY9 529 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 DCAKDQ8WVC6 231 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 GMCL1Q96IK5 515 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 APOPT1Q96IL0 206 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 TUBB6Q9BUF5 446 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 UNKQ9C0B0 810 aaKnown RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 RAB6CQ9H0N0 254 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 VPS11Q9H270 941 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 ACSS3Q9H6R3 686 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 PCDH9Q9HC56 1237 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 EURLQ9NYK6 297 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 ATRNL1Q5VV63 1379 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 PLIN4Q96Q06 1357 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 CCNE2O96020 404 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 MYL6P60660 151 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 DYNC1I2Q13409 638 aaKnown RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 HADHQ16836 314 aaKnown RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 OR6Y1Q8NGX8 325 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 UBA3Q8TBC4 463 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 ADAM32Q8TC27 787 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 USP13Q92995 863 aaPredicted RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 ANKRD27Q96NW4 1050 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 SPATA16Q9BXB7 569 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 KCND2Q9NZV8 630 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms