RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 JOSD2Q8TAC2 188 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 ACTL9Q8TC94 416 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 MGARPQ8TDB4 240 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 MAML1Q92585 1016 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 USP6NLQ92738 828 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 KAT2BQ92831 832 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 COPS5Q92905 334 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 CLMNQ96JQ2 1002 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 ACAP3Q96P50 834 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 TGS1Q96RS0 853 aaKnown RBP7.61□□□□□ -1.19
VPS13C-206ENST00000558338 CPXM1Q96SM3 734 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 CNPY3Q9BT09 278 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 NT5C1AQ9BXI3 368 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 MAK16Q9BXY0 300 aaKnown RBP7.61□□□□□ -1.19
VPS13C-206ENST00000558338 ELOVL4Q9GZR5 314 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 SDCBP2Q9H190 292 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 ALG2Q9H553 416 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 PIF1Q9H611 641 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 MINDY3Q9H8M7 445 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 ZWILCHQ9H900 591 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 VPS37BQ9H9H4 285 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 PLEKHA5Q9HAU0 1116 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 HAUS2Q9NVX0 235 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 RNF181Q9P0P0 153 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 CTNNAL1Q9UBT7 734 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 USP18Q9UMW8 372 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 SLC12A4Q9UP95 1085 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 ARL2BPQ9Y2Y0 163 aa7.61□□□□□ -1.19
VPS13C-206ENST00000558338 A0A087WZ62 844 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZNF487B1APH4 448 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 E7ESA3 106 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 STRNO43815 780 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 RASSF9O75901 435 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TRUB2O95900 331 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 KRT15P19012 456 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 STIP1P31948 543 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 GRM5P41594 1212 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 GPD2P43304 727 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 GEMIN4P57678 1058 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 EIF3EP60228 445 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ROR1Q01973 937 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 RNASELQ05823 741 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PDIA2Q13087 525 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ACVR2BQ13705 512 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 LRRC14Q15048 493 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PDK2Q15119 407 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 Q3C1V9 767 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZNF792Q3KQV3 632 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZC3H12AQ5D1E8 599 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 EFHC2Q5JST6 749 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 C9orf131Q5VYM1 1079 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ICE2Q659A1 982 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TXNRD3NBQ6F5E7 133 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 LCLAT1Q6UWP7 414 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 C4orf22Q6V702 233 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 RGS9BPQ6ZS82 235 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZDHHC17Q8IUH5 632 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZBED8Q8IZ13 594 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PDIK1LQ8N165 341 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 GPRC5AQ8NFJ5 357 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PYROXD1Q8WU10 500 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 NLRP7Q8WX94 980 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ALKBH8Q96BT7 664 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 HAUS1Q96CS2 278 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 HEXIM2Q96MH2 286 aaKnown RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TBCBQ99426 244 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 FDXACB1Q9BRP7 624 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TMEM121Q9BTD3 319 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TRABDQ9H4I3 376 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 SLC40A1Q9NP59 571 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 KLC4Q9NSK0 619 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 DPP3Q9NY33 737 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TBK1Q9UHD2 729 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 CYTH4Q9UIA0 394 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 AGAP1Q9UPQ3 857 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PCDHGA4Q9Y5G9 962 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 A0A1B0GUA9 196 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 RRN3P2A6NIE6 340 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PRPSAP2O60256 369 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TOMM70O94826 608 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZWINTO95229 277 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 GJB1P08034 283 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ZSCAN5DPP0CG00 497 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ARF4P18085 180 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TGM2P21980 687 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 IL1R2P27930 398 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 MIPP30301 263 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 GCLCP48506 637 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-206ENST00000558338 DYNLT1P63172 113 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 PPARDQ03181 441 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 VAC14Q08AM6 782 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 CCDC15Q0P6D6 951 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 MTFR1Q15390 333 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 SMTNL2Q2TAL5 461 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 SLC10A6Q3KNW5 377 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 RNF43Q68DV7 783 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 TAPT1Q6NXT6 567 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 MTHFD1LQ6UB35 978 aa7.6□□□□□ -1.19
VPS13C-206ENST00000558338 ILDR2Q71H61 639 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms