RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TAF1CQ15572 869 aaPredicted RBP11.37□□□□□ -0.59
USP3-206ENST00000558157 FAM110CQ1W6H9 321 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 MMEL1Q495T6 779 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 GJB7Q6PEY0 223 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 OTOP1Q7RTM1 612 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 CHSY1Q86X52 802 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 IFNL1Q8IU54 200 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 ULK2Q8IYT8 1036 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 MARVELD2Q8N4S9 558 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 GPRASP2Q96D09 838 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 MTBPQ96DY7 904 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 OXNAD1Q96HP4 312 aaPredicted RBP11.37□□□□□ -0.59
USP3-206ENST00000558157 ZIC5Q96T25 663 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 TTC1Q99614 292 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 TSSK1BQ9BXA7 367 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 GPR88Q9GZN0 384 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 Q9H521 79 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 MANSC1Q9H8J5 431 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 S100A14Q9HCY8 104 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 APEX2Q9UBZ4 518 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 CPA4Q9UI42 421 aa11.37□□□□□ -0.59
USP3-206ENST00000558157 DNAJC25-GNG10A0A024R161 153 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 B2RBV5 119 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 BAG2O95816 211 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 MTTPP55157 894 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 MESDQ14696 234 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 MAPK6Q16659 721 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 CLEC16AQ2KHT3 1053 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 C1orf146Q5VVC0 180 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 GRAMD4Q6IC98 578 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 CYP4F22Q6NT55 531 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 NLRX1Q86UT6 975 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 ZNF276Q8N554 614 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 ZNF784Q8NCA9 323 aaPredicted RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 ERMNQ8TAM6 284 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 DQX1Q8TE96 717 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 VPS50Q96JG6 964 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 HHIPL1Q96JK4 782 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 TSPAN18Q96SJ8 248 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 RBM15Q96T37 977 aaKnown RBP eCLIP11.36□□□□□ -0.59
USP3-206ENST00000558157 POP1Q99575 1024 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 RIT2Q99578 217 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 TMEM120AQ9BXJ8 343 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 TAS2R14Q9NYV8 317 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 UVRAGQ9P2Y5 699 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 NEU2Q9Y3R4 380 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 FCHO1O14526 889 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 DHX15O43143 795 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 DENRO43583 198 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 OR6B1O95007 311 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 TFAP2AP05549 437 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 KRT18P05783 430 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 DLDP09622 509 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 DLATP10515 647 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 EDNRBP24530 442 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 SLC1A1P43005 524 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 CYP4A11Q02928 519 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 SREBF2Q12772 1141 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 STXBP2Q15833 593 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 PKN2Q16513 984 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 POTEGQ6S5H5 508 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 B3GNT9Q6UX72 402 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 Q6ZNX1 250 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 RAPH1Q70E73 1250 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 ALLCQ8N6M5 410 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 PSPC1Q8WXF1 523 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 ITPKCQ96DU7 683 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 EIF2AK1Q9BQI3 630 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 KCNK13Q9HB14 408 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 ARHGEF4Q9NR80 690 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 SEPT11Q9NVA2 429 aaKnown RBP11.36□□□□□ -0.59
USP3-206ENST00000558157 PPM1HQ9ULR3 514 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 PADI4Q9UM07 663 aa11.36□□□□□ -0.59
USP3-206ENST00000558157 C15orf38-AP3S2A0A0A6YYH1 394 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 SH3PXD2BA1X283 911 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 CCDC162PA2VCL2 907 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 TMEM247A6NEH6 219 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 CAPN14A8MX76 684 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 SPECC1L-ADORA2AF8WAN1 911 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 CASQ2O14958 399 aaPredicted RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 STAM2O75886 525 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 PDE5AO76074 875 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 SPATA31C1P0DKV0 1188 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 FGFR1P11362 822 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 PSMC2P35998 433 aaKnown RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 FMO5P49326 533 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 GALK1P51570 392 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 ARPINQ7Z6K5 226 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 CATSPER3Q86XQ3 398 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 PLEKHO2Q8TD55 490 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 DNAJC1Q96KC8 554 aaKnown RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 C9orf72Q96LT7 481 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 DCLK3Q9C098 648 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 TRPV5Q9NQA5 729 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 KCNK4Q9NYG8 393 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 SLC7A8Q9UHI5 535 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 KIAA1024Q9UPX6 916 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.35□□□□□ -0.59
USP3-206ENST00000558157 MCM3APO60318 1980 aa11.35□□□□□ -0.59
USP3-206ENST00000558157 NFASCO94856 1347 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms