RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 SATB1Q01826 763 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 ATP1A4Q13733 1029 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 KRT32Q14532 448 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 PTCHD3Q3KNS1 767 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 TTC22Q5TAA0 569 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 SLC9C2Q5TAH2 1124 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 ATG16L1Q676U5 607 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 HAUS3Q68CZ6 603 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 EFCAB12Q6NXP0 572 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 TAPT1Q6NXT6 567 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 TAF2Q6P1X5 1199 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 BBS12Q6ZW61 710 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 NEK10Q6ZWH5 1172 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 DOK3Q7L591 496 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 SYT13Q7L8C5 426 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 OR8H2Q8N162 312 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 CFAP52Q8N1V2 620 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 TSPYL6Q8N831 410 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 DNAJB14Q8TBM8 379 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 ADAMTS18Q8TE60 1221 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 RFFLQ8WZ73 363 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 RSC1A1Q92681 617 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 SDCCAG3Q96C92 435 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 MBD6Q96DN6 1003 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 SIGLEC10Q96LC7 697 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 FAM227BQ96M60 508 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 ZNF512Q96ME7 567 aaPredicted RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 TRIB1Q96RU8 372 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 SERINC2Q96SA4 455 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 CPPED1Q9BRF8 314 aaPredicted RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 PAIP1Q9H074 479 aaKnown RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 C12orf65Q9H3J6 166 aaKnown RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 SMOC2Q9H3U7 446 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 RNPEPQ9H4A4 650 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 G6PC2Q9NQR9 355 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 FSCN3Q9NQT6 498 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 POGKQ9P215 609 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 ORC3Q9UBD5 711 aaPredicted RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 KCND3Q9UK17 655 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 C19orf53Q9UNZ5 99 aaPredicted RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 MRPS17Q9Y2R5 130 aaKnown RBP3.56□□□□□ -1.84
TRAV28-201ENST00000557548 IRAK3Q9Y616 596 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 RAD54BQ9Y620 910 aa3.56□□□□□ -1.84
TRAV28-201ENST00000557548 KAT6BQ8WYB5 2073 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 A0A087X0M5 115 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PNMA6EA0A0J9YXQ4 647 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 A0A1B0GTL3 188 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 CCDC196A0A1B0GTZ2 297 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 A0A1B0GX30 115 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 OR2W5A6NFC9 320 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PGPEP1LA6NFU8 196 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 STX16-NPEPL1H3BU86 382 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 STX16O14662 325 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 ZSCAN9O15535 394 aaPredicted RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 TAF5LO75529 589 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 RPP40O75818 363 aaKnown RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PI3P19957 117 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 KCNA3P22001 575 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 LRPAP1P30533 357 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 NTSR1P30989 418 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 GCLCP48506 637 aaPredicted RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PXNP49023 591 aaPredicted RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 DGKEP52429 567 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 CHN2P52757 468 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 LOXL3P58215 753 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 POU5F1Q01860 360 aaKnown RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PIGFQ07326 219 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 MYO1EQ12965 1108 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 SSPNQ14714 243 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 MLANAQ16655 118 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 TSTQ16762 297 aaKnown RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 TRIM60Q495X7 471 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 GALNTL6Q49A17 601 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 ACAD10Q6JQN1 1059 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 FAM111BQ6SJ93 734 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 TMEM108Q6UXF1 575 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 GPRIN1Q7Z2K8 1008 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 ANKS1BQ7Z6G8 1248 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 FAM83AQ86UY5 434 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 CHD1LQ86WJ1 897 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 ZFPM1Q8IX07 1006 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 KBTBD2Q8IY47 623 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 GPR135Q8IZ08 494 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 SPARTQ8N0X7 666 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 TDRD7Q8NHU6 1098 aaKnown RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 ADAMTS17Q8TE56 1095 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 NUP133Q8WUM0 1156 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 CPT1BQ92523 772 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 PPP2R3CQ969Q6 453 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 MARS2Q96GW9 593 aaKnown RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 LRIG1Q96JA1 1093 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 LCORQ96JN0 433 aaPredicted RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 C7orf26Q96N11 449 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 DPYSL5Q9BPU6 564 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 REEP2Q9BRK0 252 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 SDF4Q9BRK5 362 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 CXorf36Q9H7Y0 433 aa3.55□□□□□ -1.84
TRAV28-201ENST00000557548 UNKLQ9H9P5 680 aaKnown RBP3.55□□□□□ -1.84
TRAV28-201ENST00000557548 SMYD2Q9NRG4 433 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms