RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 HLA-CQ95604 372 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 ZNF512Q96ME7 567 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-227ENST00000557269 CHP1Q99653 195 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 SLC4A5Q9BY07 1137 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 PIDD1Q9HB75 910 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 IL21Q9HBE4 155 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 IL37Q9NZH6 218 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 CD207Q9UJ71 328 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 PATJQ8NI35 1801 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 XYLBO75191 536 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 MOSPD3O75425 235 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 RHOP08100 348 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 TPM1P09493 284 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 CCDC172P0C7W6 258 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 UNGP13051 313 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-227ENST00000557269 GJA1P17302 382 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 PTPN2P17706 415 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 RPL34P49207 117 aaKnown RBP13.52□□□□□ -0.25
SHMT2-227ENST00000557269 TKTL1P51854 596 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 KIF11P52732 1056 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 NOMO3P69849 1222 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 TFF2Q03403 129 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 PDCLQ13371 301 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 C2CD6Q53TS8 623 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 NAA35Q5VZE5 725 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 POTEHQ6S545 545 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 ITIH5Q86UX2 942 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 CNGA4Q8IV77 575 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 SLC30A5Q8TAD4 765 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 KCTD13Q8WZ19 329 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 TCEAL4Q96EI5 215 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 MYRFLQ96LU7 910 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 CEP295NLQ96MC4 621 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 CPXM1Q96SM3 734 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 TTLL2Q9BWV7 592 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 PDCL3Q9H2J4 239 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 PNPLA8Q9NP80 782 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 TAS2R14Q9NYV8 317 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 IMPACTQ9P2X3 320 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 USP15Q9Y4E8 981 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-227ENST00000557269 ASB3Q9Y575 518 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 USP3Q9Y6I4 520 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 GREB1Q4ZG55 1949 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 C2orf16Q68DN1 1984 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 NOTCH4Q99466 2003 aa13.52□□□□□ -0.25
SHMT2-227ENST00000557269 DOCK6Q96HP0 2047 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 TADA3O75528 432 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 F11P03951 625 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ERBB2P04626 1255 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 USP17L7P0C7H9 530 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 CSH1P0DML2 217 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 CSH2P0DML3 217 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 MYL4P12829 197 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 LCP1P13796 627 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 TNFAIP3P21580 790 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 EIF4A3P38919 411 aaKnown RBP13.51□□□□□ -0.25
SHMT2-227ENST00000557269 EPHA5P54756 1037 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 SLC8A3P57103 927 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ITIH3Q06033 890 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ADIGQ0VDE8 80 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 TAF10Q12962 218 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 CLEC16AQ2KHT3 1053 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 PTPN20Q4JDL3 420 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 TDRD12Q587J7 1177 aaKnown RBP13.51□□□□□ -0.25
SHMT2-227ENST00000557269 PRSS36Q5K4E3 855 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 GAREM2Q75VX8 874 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 BHLHA9Q7RTU4 235 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 FMNL3Q8IVF7 1028 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 SCUBE3Q8IX30 993 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ELMOD1Q8N336 334 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 TMEM35BQ8NCS4 154 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ITFG1Q8TB96 612 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 CLEC4CQ8WTT0 213 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 STK32AQ8WU08 396 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 SUSD6Q92537 303 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 TRMT2BQ96GJ1 504 aaKnown RBP13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ULBP1Q9BZM6 244 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 ST7Q9NRC1 585 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 SEPT11Q9NVA2 429 aaKnown RBP13.51□□□□□ -0.25
SHMT2-227ENST00000557269 CHORDC1Q9UHD1 332 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-227ENST00000557269 MYH10P35580 1976 aa13.51□□□□□ -0.25
SHMT2-227ENST00000557269 A0A087X0T9 212 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 FAM92AA1XBS5 289 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 E5RJQ4 531 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 PAPSS1O43252 624 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-227ENST00000557269 MBTPS2O43462 519 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 LSM8O95777 96 aaKnown RBP13.5□□□□□ -0.25
SHMT2-227ENST00000557269 FAM228BP0C875 321 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 YWHAQP27348 245 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 GABRR2P28476 465 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 TAF12Q16514 161 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 ASTE1Q2TB18 679 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-227ENST00000557269 LEXMQ3ZCV2 418 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 PABPC1LQ4VXU2 614 aaKnown RBP13.5□□□□□ -0.25
SHMT2-227ENST00000557269 ATAT1Q5SQI0 421 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 CYP4A22Q5TCH4 519 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 CES5AQ6NT32 575 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 CYP26C1Q6V0L0 522 aa13.5□□□□□ -0.25
SHMT2-227ENST00000557269 TRIM72Q6ZMU5 477 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms