RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SNX5	Q9Y5X3	404 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	IVNS1ABP	Q9Y6Y0	642 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	MYH8	P13535	1937 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ADGRA2	Q96PE1	1338 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PEX1	O43933	1283 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	VCP	P55072	806 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	TAS2R40	P59535	323 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPP3CA	Q08209	521 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CNPY1	Q3B7I2	92 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	TKFC	Q3LXA3	575 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ATP13A4	Q4VNC1	1196 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	C16orf46	Q6P387	395 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	B3GNT6	Q6ZMB0	384 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	TMPRSS6	Q8IU80	811 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	EMC1	Q8N766	993 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CDC26	Q8NHZ8	85 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	TFB1M	Q8WVM0	346 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP6NL	Q92738	828 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	DACT3	Q96B18	629 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	TIPIN	Q9BVW5	301 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	A1CF	Q9NQ94	594 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PKD2L2	Q9NZM6	624 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NYAP2	Q9P242	653 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC39A10	Q9ULF5	831 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GTPBP10	A4D1E9	387 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NKRF	O15226	690 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	STRN	O43815	780 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PPP1R11	O60927	126 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	E2F6	O75461	281 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CREB1	P16220	341 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PDGFRA	P16234	1089 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	STMN1	P16949	149 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZFX	P17010	805 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NELFE	P18615	380 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	INPP1	P49441	399 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SERPINB8	P50452	374 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAMLD1	Q13495	774 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FASTKD3	Q14CZ7	662 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CES3	Q6UWW8	571 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FRA10AC1	Q70Z53	315 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	KIAA2013	Q8IYS2	634 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	DDI1	Q8WTU0	396 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	DCUN1D5	Q9BTE7	237 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FHDC1	Q9C0D6	1143 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PIF1	Q9H611	641 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCNMB3	Q9NPA1	279 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC5A4	Q9NY91	659 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NR2E1	Q9Y466	385 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	UMODL1	Q5DID0	1318 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CACNA1F	O60840	1977 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ANGPT2	O15123	496 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GLRA3	O75311	464 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GLRA2	P23416	452 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	SHMT1	P34896	483 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PRKCI	P41743	596 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NPTX2	P47972	431 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	RTP1	P59025	263 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	FMO1	Q01740	532 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	MAPRE2	Q15555	327 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	NRF1	Q16656	503 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	TRMT5	Q32P41	509 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	MFSD7	Q6UXD7	560 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	C4orf50	Q6ZRC1	276 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	PID1	Q7Z2X4	250 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ULK2	Q8IYT8	1036 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	CYP4X1	Q8N118	509 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ALG3	Q92685	438 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	DACH2	Q96NX9	599 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	LRRC4	Q9HBW1	653 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ACSS2	Q9NR19	701 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZNF277	Q9NRM2	450 aa	Predicted RBP	5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNF146	Q9NTX7	359 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	GID8	Q9NWU2	228 aa		5.17	□□□□□ -1.58
SYNE2-223	ENST00000557005	KCP	Q6ZWJ8	1503 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	TUBGCP6	Q96RT7	1819 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ARHGEF37	A1IGU5	675 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	C5orf60	A6NFR6	353 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SNX2	O60749	519 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	FKBP6	O75344	327 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	VIL1	P09327	827 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ATIC	P31939	592 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	EIF2B2	P49770	351 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PKNOX1	P55347	436 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SNRPF	P62306	86 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	TNFAIP2	Q03169	654 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	SLC1A5	Q15758	541 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	DHDDS	Q86SQ9	333 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	RNF148	Q8N7C7	305 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	KIF12	Q96FN5	646 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	WNK4	Q96J92	1243 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	HIC2	Q96JB3	615 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	CNDP1	Q96KN2	507 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	FAM84A	Q96KN4	292 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	WDR18	Q9BV38	432 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	NACA2	Q9H009	215 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	RSAD1	Q9HA92	442 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	GRHL1	Q9NZI5	618 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	USP18	Q9UMW8	372 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	PCDHA10	Q9Y5I2	948 aa		5.16	□□□□□ -1.58
SYNE2-223	ENST00000557005	ZHX2	Q9Y6X8	837 aa		5.16	□□□□□ -1.58

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