RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ZNF268Q14587 947 aaPredicted RBP11.3□□□□□ -0.6
LINC00239-201ENST00000556973 SGO2Q562F6 1265 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 CDKAL1Q5VV42 579 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 SNX30Q5VWJ9 437 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 C11orf57Q6ZUT1 292 aaPredicted RBP11.3□□□□□ -0.6
LINC00239-201ENST00000556973 HFE2Q6ZVN8 426 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 GPIHBP1Q8IV16 184 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 YAF2Q8IY57 180 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 SCAMP5Q8TAC9 235 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 BPIFB1Q8TDL5 484 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 IRF7Q92985 503 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 KAT5Q92993 513 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 KREMEN1Q96MU8 473 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 BRD9Q9H8M2 597 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 TRPV5Q9NQA5 729 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 THG1LQ9NWX6 298 aaKnown RBP11.3□□□□□ -0.6
LINC00239-201ENST00000556973 APEX2Q9UBZ4 518 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 CHORDC1Q9UHD1 332 aaPredicted RBP11.3□□□□□ -0.6
LINC00239-201ENST00000556973 CNTN6Q9UQ52 1028 aa11.3□□□□□ -0.6
LINC00239-201ENST00000556973 BDP1A6H8Y1 2624 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 C2orf78A6NCI8 922 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 HHLA1C9JL84 531 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 CHADO15335 359 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 ABL1P00519 1130 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 CD19P15391 556 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 GDI1P31150 447 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 FCHO2Q0JRZ9 810 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 IFRD2Q12894 506 aaPredicted RBP11.29□□□□□ -0.6
LINC00239-201ENST00000556973 GRM2Q14416 872 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 STILQ15468 1287 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 CNGA2Q16280 664 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 ARHGAP29Q52LW3 1261 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 SLC44A4Q53GD3 710 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 LCLAT1Q6UWP7 414 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 SIX5Q8N196 739 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 ARL14EPQ8N8R7 260 aaPredicted RBP11.29□□□□□ -0.6
LINC00239-201ENST00000556973 RBBP8NLQ8NC74 664 aaPredicted RBP11.29□□□□□ -0.6
LINC00239-201ENST00000556973 ANKRD20A12PQ8NF67 263 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 DNASE1L2Q92874 299 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 USP13Q92995 863 aaPredicted RBP11.29□□□□□ -0.6
LINC00239-201ENST00000556973 FBXO32Q969P5 355 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 SHDQ96IW2 340 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 CYP2S1Q96SQ9 504 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 BPIFA3Q9BQP9 254 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 VPS16Q9H269 839 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 MFSD1Q9H3U5 465 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 KIF9Q9HAQ2 790 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 TRPC7Q9HCX4 862 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 TLR8Q9NR97 1041 aaKnown RBP11.29□□□□□ -0.6
LINC00239-201ENST00000556973 HESX1Q9UBX0 185 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 TSPAN16Q9UKR8 245 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 CA14Q9ULX7 337 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 SCML2Q9UQR0 700 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 NCANO14594 1321 aa11.29□□□□□ -0.6
LINC00239-201ENST00000556973 HELZP42694 1942 aaKnown RBP11.29□□□□□ -0.6
LINC00239-201ENST00000556973 NCOR1O75376 2440 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 MYO16Q9Y6X6 1858 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 KRBA1A5PL33 1030 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 LRRC10BA6NIK2 292 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 SMTNL1A8MU46 457 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 PES1O00541 588 aaKnown RBP11.28□□□□□ -0.6
LINC00239-201ENST00000556973 PRAMEF12O95522 483 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 CKMP06732 381 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 ZDHHC11BP0C7U3 371 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 KRT5P13647 590 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 CDK11BP21127 795 aaKnown RBP11.28□□□□□ -0.6
LINC00239-201ENST00000556973 CLCN5P51795 746 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 KIF11P52732 1056 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 STARD6P59095 220 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 BST2Q10589 180 aaKnown RBP11.28□□□□□ -0.6
LINC00239-201ENST00000556973 KCNMA1Q12791 1236 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 NCAPHQ15003 741 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 KRT31Q15323 416 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 ARHGAP44Q17R89 818 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 ANO6Q4KMQ2 910 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 HECTD3Q5T447 861 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 SUGP1Q8IWZ8 645 aaKnown RBP11.28□□□□□ -0.6
LINC00239-201ENST00000556973 FBXL6Q8N531 539 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 RSPRY1Q96DX4 576 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 LRRC3BQ96PB8 259 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 SLC22A12Q96S37 553 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 FUCA2Q9BTY2 467 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 RNF38Q9H0F5 515 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 SMG9Q9H0W8 520 aaKnown RBP11.28□□□□□ -0.6
LINC00239-201ENST00000556973 LIMA1Q9UHB6 759 aaKnown RBP11.28□□□□□ -0.6
LINC00239-201ENST00000556973 USP3Q9Y6I4 520 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 TICRRQ7Z2Z1 1910 aa11.28□□□□□ -0.6
LINC00239-201ENST00000556973 O00370 1275 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 STK25O00506 426 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 XPO1O14980 1071 aaKnown RBP11.27□□□□□ -0.61
LINC00239-201ENST00000556973 MED7O43513 233 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 OLFM2O95897 454 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 OAS1P00973 400 aaKnown RBP11.27□□□□□ -0.61
LINC00239-201ENST00000556973 GLULP15104 373 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 TCF3P15923 654 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 PSEN1P49768 467 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 TUBP50607 506 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 ZNF132P52740 706 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 BCAT1P54687 386 aa11.27□□□□□ -0.61
LINC00239-201ENST00000556973 MLLT6P55198 1093 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms