RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CHSY1Q86X52 802 aa6.23□□□□□ -1.41
PRPF39-209ENST00000556353 RPL36ALQ969Q0 106 aaKnown RBP6.23□□□□□ -1.41
PRPF39-209ENST00000556353 LENG8Q96PV6 779 aaPredicted RBP6.23□□□□□ -1.41
PRPF39-209ENST00000556353 ASB2Q96Q27 587 aa6.23□□□□□ -1.41
PRPF39-209ENST00000556353 SH2D3AQ9BRG2 576 aa6.23□□□□□ -1.41
PRPF39-209ENST00000556353 QTRT1Q9BXR0 403 aaKnown RBP6.23□□□□□ -1.41
PRPF39-209ENST00000556353 B3GNT5Q9BYG0 378 aa6.23□□□□□ -1.41
PRPF39-209ENST00000556353 BHMT2Q9H2M3 363 aa6.23□□□□□ -1.41
PRPF39-209ENST00000556353 PAXBP1Q9Y5B6 917 aa6.23□□□□□ -1.41
PRPF39-209ENST00000556353 GRIN2AQ12879 1464 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 RUSC2Q8N2Y8 1516 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 EXOC3O60645 756 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 PDE8BO95263 885 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 U2AF1L5P0DN76 240 aaPredicted RBP6.22□□□□□ -1.41
PRPF39-209ENST00000556353 MYBP10242 640 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 EN2P19622 333 aaPredicted RBP6.22□□□□□ -1.41
PRPF39-209ENST00000556353 SLC7A1P30825 629 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 U2AF1Q01081 240 aaKnown RBP eCLIP6.22□□□□□ -1.416e-6■■■□□ 14.7
PRPF39-209ENST00000556353 LY6KQ17RY6 165 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 SUPT20HL1Q3ZLR7 823 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 CATSPERGQ6ZRH7 1159 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 OVCH2Q7RTZ1 564 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 SPARTQ8N0X7 666 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 TERB1Q8NA31 727 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 IL31RAQ8NI17 732 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 TMEM171Q8WVE6 324 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 PPP2R3CQ969Q6 453 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 THAP7Q9BT49 309 aaPredicted RBP6.22□□□□□ -1.41
PRPF39-209ENST00000556353 BTBD3Q9Y2F9 522 aa6.22□□□□□ -1.41
PRPF39-209ENST00000556353 TMEM233B4DJY2 109 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 POC1B-GALNT4F8VUJ3 575 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 VNN1O95497 513 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 E2F1Q01094 437 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 KLF9Q13886 244 aaPredicted RBP6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CYP1B1Q16678 543 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CERKLQ49MI3 558 aaPredicted RBP6.21□□□□□ -1.42
PRPF39-209ENST00000556353 ODR4Q5SWX8 454 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CERCAMQ5T4B2 595 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 SLC9A4Q6AI14 798 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 FCRL6Q6DN72 434 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CYB5RLQ6IPT4 315 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CXorf57Q6NSI4 855 aaKnown RBP6.21□□□□□ -1.42
PRPF39-209ENST00000556353 MAEAQ7L5Y9 396 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 GALNT4Q8N4A0 578 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 RSPRY1Q96DX4 576 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 SUCLG2Q96I99 432 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 RITA1Q96K30 269 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 SNX18Q96RF0 628 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 C17orf80Q9BSJ5 609 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CIPCQ9C0C6 399 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 ZNF518BQ9C0D4 1074 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 SMURF2Q9HAU4 748 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 ATP6V0A4Q9HBG4 840 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 GBA2Q9HCG7 927 aaPredicted RBP6.21□□□□□ -1.42
PRPF39-209ENST00000556353 TFCP2L1Q9NZI6 479 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 NUP160Q12769 1436 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 FER1L4A9Z1Z3 1794 aa6.21□□□□□ -1.42
PRPF39-209ENST00000556353 CAPN8A6NHC0 703 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 UBE2Q2LH0YL09 131 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 AP4M1O00189 453 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 PSMD9O00233 223 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 ADAMTS3O15072 1205 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 TP73O15350 636 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 PTGER1P34995 402 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 MLC1Q15049 377 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 ETFDHQ16134 617 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 C11orf87Q6NUJ2 197 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 SERPINA13PQ6UXR4 307 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 DPY19L3Q6ZPD9 716 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 COL23A1Q86Y22 540 aaPredicted RBP6.2□□□□□ -1.42
PRPF39-209ENST00000556353 GALNT16Q8N428 558 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 SIRT6Q8N6T7 355 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 C8orf58Q8NAV2 365 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 DENND1AQ8TEH3 1009 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 RUNDC1Q96C34 613 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 C5orf34Q96MH7 638 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 TMEM60Q9H2L4 133 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 A1CFQ9NQ94 594 aaKnown RBP6.2□□□□□ -1.42
PRPF39-209ENST00000556353 ERICH3Q5RHP9 1530 aa6.2□□□□□ -1.42
PRPF39-209ENST00000556353 WRNQ14191 1432 aaPredicted RBP eCLIP6.19□□□□□ -1.42
PRPF39-209ENST00000556353 FAM227AF5H4B4 570 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 USP1O94782 785 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 MYCLP12524 364 aaPredicted RBP6.19□□□□□ -1.42
PRPF39-209ENST00000556353 FPR3P25089 353 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 PRKAR1BP31321 381 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 RENBPP51606 427 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 CCNIQ14094 377 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 DCAF12L1Q5VU92 463 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 MIS18BP1Q6P0N0 1132 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 PRR25Q96S07 402 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 PPP1R9BQ96SB3 815 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 AMFRQ9UKV5 643 aa6.19□□□□□ -1.42
PRPF39-209ENST00000556353 SMIM35A0A1B0GVV1 85 aa6.18□□□□□ -1.42
PRPF39-209ENST00000556353 TBX3O15119 743 aa6.18□□□□□ -1.42
PRPF39-209ENST00000556353 CHRM5P08912 532 aaPredicted RBP6.18□□□□□ -1.42
PRPF39-209ENST00000556353 ARHGAP25P42331 645 aa6.18□□□□□ -1.42
PRPF39-209ENST00000556353 BCAT1P54687 386 aa6.18□□□□□ -1.42
PRPF39-209ENST00000556353 SUMO2P61956 95 aaKnown RBP6.18□□□□□ -1.42
PRPF39-209ENST00000556353 INSCQ1MX18 579 aa6.18□□□□□ -1.42
PRPF39-209ENST00000556353 PTCHD3Q3KNS1 767 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms