RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ATP2C2O75185 946 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 SYPP08247 313 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 POLR2BP30876 1174 aaKnown RBP13.84□□□□□ -0.19
VPS29-211ENST00000553128 EIF2DP41214 584 aaKnown RBP13.84□□□□□ -0.19
VPS29-211ENST00000553128 GRIA2P42262 883 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 TNFRSF4P43489 277 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 SLC7A9P82251 487 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 PLEKHG6Q3KR16 790 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 CFAP221Q4G0U5 840 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 ADALQ6DHV7 355 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 SLC36A4Q6YBV0 504 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 SPATA2LQ8IUW3 424 aaPredicted RBP13.84□□□□□ -0.19
VPS29-211ENST00000553128 MYCT1Q8N699 235 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 NAT16Q8N8M0 369 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 SPRYD3Q8NCJ5 442 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 ZSWIM2Q8NEG5 633 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 FBXO18Q8NFZ0 1043 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 IL21RQ9HBE5 538 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 CD248Q9HCU0 757 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 TOR4AQ9NXH8 423 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 CFAP97Q9P2B7 532 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 PCOLCE2Q9UKZ9 415 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 NOL7Q9UMY1 257 aaKnown RBP13.84□□□□□ -0.19
VPS29-211ENST00000553128 MYOFQ9NZM1 2061 aa13.84□□□□□ -0.19
VPS29-211ENST00000553128 URB1O60287 2271 aaKnown RBP13.83□□□□□ -0.2
VPS29-211ENST00000553128 A0A1W2PQD8 194 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 ADH5P11766 374 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 NDUFV2P19404 249 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 CYP4F3Q08477 520 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 GRIK2Q13002 908 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 GNL2Q13823 731 aaKnown RBP13.83□□□□□ -0.2
VPS29-211ENST00000553128 LY6G5CQ5SRR4 150 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 DTHD1Q6ZMT9 781 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 RABEPKQ7Z6M1 372 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 RGL4Q8IZJ4 473 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 ZNF513Q8N8E2 541 aaPredicted RBP13.83□□□□□ -0.2
VPS29-211ENST00000553128 C1orf127Q8N9H9 656 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 CXorf38Q8TB03 319 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 ZNF560Q96MR9 790 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 ACOX2Q99424 681 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 AGO2Q9UKV8 859 aaKnown RBP13.83□□□□□ -0.2
VPS29-211ENST00000553128 AGAP1Q9UPQ3 857 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 APOBEC2Q9Y235 224 aaKnown RBP13.83□□□□□ -0.2
VPS29-211ENST00000553128 MAST4O15021 2626 aa13.83□□□□□ -0.2
VPS29-211ENST00000553128 TBC1D3BA6NDS4 549 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ZNF840PA6NDX5 716 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 TULP1O00294 542 aaPredicted RBP13.82□□□□□ -0.2
VPS29-211ENST00000553128 HUS1O60921 280 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 OLFM2O95897 454 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ITGB3P05106 788 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 HOXB2P14652 356 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ADSSP30520 456 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 PRPHP41219 470 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ZNF131P52739 623 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 PSMC1P62191 440 aaKnown RBP13.82□□□□□ -0.2
VPS29-211ENST00000553128 GTF2BQ00403 316 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 MYL7Q01449 175 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 DHX8Q14562 1220 aaKnown RBP13.82□□□□□ -0.2
VPS29-211ENST00000553128 TMEM119Q4V9L6 283 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 FAM171BQ6P995 826 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 TMPRSS7Q7RTY8 843 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 GLRX5Q86SX6 157 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 CCDC83Q8IWF9 413 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ETFBKMTQ8IXQ9 262 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ZNF419Q96HQ0 510 aaPredicted RBP13.82□□□□□ -0.2
VPS29-211ENST00000553128 TRPM5Q9NZQ8 1165 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 KCND2Q9NZV8 630 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 DKK4Q9UBT3 224 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 ODF2LQ9ULJ1 636 aa13.82□□□□□ -0.2
VPS29-211ENST00000553128 MYO18AQ92614 2054 aaKnown RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 CFAP46Q8IYW2 2715 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 FAM149AA5PLN7 773 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 TRABD2BA6NFA1 517 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 GABRDO14764 452 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 TRAK2O60296 914 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 TULP3O75386 442 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 ADH1CP00326 375 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 ABL1P00519 1130 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 OAS1P00973 400 aaKnown RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 ATXN1LP0C7T5 689 aaKnown RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 PLCG1P19174 1290 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 BDNFP23560 247 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 LMO2P25791 158 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 MAGEA11P43364 429 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 TFAMQ00059 246 aaKnown RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 C19orf57Q0VDD7 668 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 CAMK2BQ13554 666 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 EGFLAMQ63HQ2 1017 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 DENND5BQ6ZUT9 1274 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 GPBP1Q86WP2 473 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 ADGRF2Q8IZF7 708 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 TMEM86AQ8N2M4 240 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 SETD7Q8WTS6 366 aaKnown RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 MYLPFQ96A32 169 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 FUBP3Q96I24 572 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS29-211ENST00000553128 SPATA17Q96L03 361 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 CRTAC1Q9NQ79 661 aa13.81□□□□□ -0.2
VPS29-211ENST00000553128 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 KIAA1522Q9P206 1035 aaPredicted RBP13.81□□□□□ -0.2
VPS29-211ENST00000553128 SNX9Q9Y5X1 595 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms