RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 IFT43Q96FT9 208 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ZBTB45Q96K62 511 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 PLEKHG4BQ96PX9 1271 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 FIZ1Q96SL8 496 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 GAD1Q99259 594 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TSG101Q99816 390 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TIPINQ9BVW5 301 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TARS2Q9BW92 718 aaKnown RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 PACSIN1Q9BY11 444 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TRIM31Q9BZY9 425 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 EPB41L4BQ9H329 900 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 RSAD1Q9HA92 442 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 C17orf75Q9HAS0 396 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 DMAP1Q9NPF5 467 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 NLRC4Q9NPP4 1024 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 OLFML3Q9NRN5 406 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TBC1D13Q9NVG8 400 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 KLK14Q9P0G3 267 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 CTTNBP2NLQ9P2B4 639 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 LARSQ9P2J5 1176 aaKnown RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SEL1LQ9UBV2 794 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 DNAJB4Q9UDY4 337 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ATG2AQ2TAZ0 1938 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ARL5CA6NH57 179 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 HOXA2O43364 376 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ATP5HO75947 161 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 DDHD2O94830 711 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 POMCP01189 267 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SKIP12755 728 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ITGA4P13612 1032 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 MLH1P40692 756 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 PTDSS1P48651 473 aaKnown RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 CCDC15Q0P6D6 951 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 KNOP1Q1ED39 458 aaKnown RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM132AQ24JP5 1023 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 NOMO2Q5JPE7 1267 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ATF7IP2Q5U623 682 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 KCNT2Q6UVM3 1135 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 GLB1LQ6UWU2 654 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 LONP2Q86WA8 852 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM173Q86WV6 379 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 RASGEF1CQ8N431 466 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ENDOVQ8N8Q3 282 aaKnown RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 COLGALT1Q8NBJ5 622 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 RBBP8NLQ8NC74 664 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SLC17A8Q8NDX2 589 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SPPL3Q8TCT6 385 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SPIRE2Q8WWL2 714 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SAMD11Q96NU1 681 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 NUDCD1Q96RS6 583 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ACO2Q99798 780 aaKnown RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 IKZF4Q9H2S9 585 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 KCTD10Q9H3F6 313 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM134Q9H6X4 195 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 ZWILCHQ9H900 591 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 SNTG2Q9NY99 539 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 KLHL14Q9P2G3 628 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 PCDHB13Q9Y5F0 798 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 A0A087X0T9 212 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ZC3H11AO75152 810 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 RB1P06400 928 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 FAM228BP0C875 321 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 MAPTP10636 758 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 IRS1P35568 1242 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 NCKAP1LP55160 1127 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 FKBP3Q00688 224 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 LRRC63Q05C16 580 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 MTA1Q13330 715 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 C1QTNF12Q5T7M4 302 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 HAUS6Q7Z4H7 955 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 HOMEZQ8IX15 550 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 AGGF1Q8N302 714 aaeCLIP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 LRRC43Q8N309 656 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 UTP4Q969X6 686 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 FAM136AQ96C01 138 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PGBD4Q96DM1 585 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 TRIM51Q9BSJ1 452 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 C11orf84Q9BUA3 381 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PLVAPQ9BX97 442 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 FAM192AQ9GZU8 254 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 HAPLN2Q9GZV7 340 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 LRMDAQ9H2I8 198 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 VCX3BQ9H321 246 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 NRDE2Q9H7Z3 1164 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PTPRHQ9HD43 1115 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 VCX3AQ9NNX9 186 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 CACNG4Q9UBN1 327 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 PRKAG3Q9UGI9 489 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 LRCH1Q9Y2L9 728 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 NCOR1O75376 2440 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 F8W810 466 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 NVLO15381 856 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 FGF18O76093 207 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 LMNAP02545 664 aaKnown RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 FAM163BP0C2L3 166 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 TPP2P29144 1249 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-216ENST00000552909 SCNN1GP51170 649 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 BCAR1P56945 870 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 ERVFC1P60507 584 aa8.04□□□□□ -1.12
LIMA1-216ENST00000552909 OSTNP61366 133 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms