RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 C16orf70Q9BSU1 422 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GCOM2Q9BZD3 368 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 OSBPL7Q9BZF2 842 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 UNKQ9C0B0 810 aaKnown RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 SIK2Q9H0K1 926 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TRABDQ9H4I3 376 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 HOMER3Q9NSC5 361 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 UBP1Q9NZI7 540 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 FLRT1Q9NZU1 646 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TTC3P53804 2025 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 LTBP3Q9NS15 1303 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 A0A087WUV0 522 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 C2orf71A6NGG8 1288 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 DNM1LO00429 736 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 PSTPIP1O43586 416 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 FAM189A1O60320 539 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 SHOX2O60902 331 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 P4HA1P13674 534 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GBP2P32456 591 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GNL1P36915 607 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 CDKN2BP42772 138 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MAGEA9P43362 315 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 PGGT1BP53609 377 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 VCPP55072 806 aaKnown RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GBE1Q04446 702 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MOGSQ13724 837 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 PIGHQ14442 188 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 HIF1AQ16665 826 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MDH1BQ5I0G3 518 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 IL31Q6EBC2 164 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MICALCLQ6ZW33 695 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TAOK1Q7L7X3 1001 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TLK2Q86UE8 772 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 TTC30AQ86WT1 665 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 KATNAL2Q8IYT4 538 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 C3orf20Q8ND61 904 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 FBF1Q8TES7 1133 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MAML3Q96JK9 1138 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 AP5M1Q9H0R1 490 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 CD248Q9HCU0 757 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 MARCOQ9UEW3 520 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-215ENST00000552823 GJD2Q9UKL4 321 aa5.85□□□□□ -1.47
LIMA1-215ENST00000552823 CEP290O15078 2479 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 NUP205Q92621 2012 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MYADML2A6NDP7 307 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 GLTPD2A6NH11 291 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 GOLGA8TH3BQL2 631 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 KCNK1O00180 336 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 DNALI1O14645 258 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 TNPO2O14787 897 aaKnown RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 SPTLC1O15269 473 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 TP73O15350 636 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 UGT1A9O60656 530 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 CILPO75339 1184 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MTA2O94776 668 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 TMEM63AO94886 807 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 TOP3BO95985 862 aaKnown RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MMP3P08254 477 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 FGFR1P11362 822 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 DRD4P21917 467 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ELK3P41970 407 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 GPD2P43304 727 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MAP3K7CLP57077 242 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 SOX4Q06945 474 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 TRIM32Q13049 653 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 PTK6Q13882 451 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 SURF1Q15526 300 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 CNGA2Q16280 664 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF484Q5JVG2 852 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 SDHAF4Q5VUM1 108 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 WSCD1Q658N2 575 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ZNF354CQ86Y25 554 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 IGDCC3Q8IVU1 814 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MSL3Q8N5Y2 521 aaKnown RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 USP6NLQ92738 828 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 PAAF1Q9BRP4 392 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ADAM7Q9H2U9 754 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 UGT1A7Q9HAW7 530 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 UGT1A10Q9HAW8 530 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 UGT1A8Q9HAW9 530 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ETNK2Q9NVF9 386 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ASNSD1Q9NWL6 643 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 BARX2Q9UMQ3 279 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 NOD1Q9Y239 953 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 KNL1Q8NG31 2342 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 DNAJC25-GNG10A0A024R161 153 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 A6NJR5 290 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 SIGLEC16A6NMB1 481 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MAGEB2O15479 319 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 B4GALT4O60513 344 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 LGR5O75473 907 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MOCS2O96007 188 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 AGTP01019 485 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 PIGRP01833 764 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 KRT4P19013 534 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 RPA3P35244 121 aaPredicted RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 MSH2P43246 934 aa5.84□□□□□ -1.47
LIMA1-215ENST00000552823 HADHBP55084 474 aaKnown RBP5.84□□□□□ -1.47
LIMA1-215ENST00000552823 ROR1Q01973 937 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms