RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 HIC2Q96JB3 615 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MCEEQ96PE7 176 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 GCNAQ96QF7 691 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SRPK1Q96SB4 655 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 RAB6CQ9H0N0 254 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CYP4F11Q9HBI6 524 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 AVENQ9NQS1 362 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SMYD2Q9NRG4 433 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SENP1Q9P0U3 644 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SNCAIPQ9Y6H5 919 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 UBE4BO95155 1302 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 hCG_1818297A0A087WSY0 165 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CAPN8A6NHC0 703 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 LRRIQ4A6NIV6 560 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 C3orf70A6NLC5 250 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 A8MXQ7 604 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 KBTBD13C9JR72 458 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 DHX15O43143 795 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PSTPIP1O43586 416 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ITM2AO43736 263 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MAP3K6O95382 1288 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MT-ND3P03897 115 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 FAM200BP0CF97 657 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ACO1P21399 889 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 STIP1P31948 543 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ARRB2P32121 409 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CDKN2BP42772 138 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 BTKQ06187 659 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TBL3Q12788 808 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 HNRNPDQ14103 355 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SEZ6Q53EL9 994 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CYP4A22Q5TCH4 519 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TATDN1Q6P1N9 297 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM270Q6UE05 265 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 UGT2A3Q6UWM9 527 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 RBM44Q6ZP01 1051 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 C15orf52Q6ZUT6 534 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 NET1Q7Z628 596 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 HPS6Q86YV9 775 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 FAM71DQ8N9W8 422 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 BBOF1Q8ND07 529 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SLC26A7Q8TE54 656 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SNRNP27Q8WVK2 155 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 RMDN3Q96TC7 470 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 FAM213AQ9BRX8 229 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 USP29Q9HBJ7 922 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM8AQ9HCN3 771 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 S100A14Q9HCY8 104 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 KCNH7Q9NS40 1196 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CHCHD3Q9NX63 227 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SLC17A6Q9P2U8 582 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SEPT9Q9UHD8 586 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 HMX2A2RU54 273 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SPDYE2BA6NHP3 402 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ARHGAP42A6NI28 874 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 F8W8V4 182 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TXNDC9O14530 226 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TM9SF1O15321 606 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 HNRNPCL1O60812 293 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ATP6V1G1O75348 118 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 VNN1O95497 513 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 F7P08709 466 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SPDYE6P0CI01 402 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 HOXA10P31260 410 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 OTUD4Q01804 1114 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ASPHQ12797 758 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 DMP1Q13316 513 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 GRM2Q14416 872 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 CHI3L2Q15782 390 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SPDYE2Q495Y8 402 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MTERF2Q49AM1 385 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TEX44Q53QW1 395 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 VWA5B1Q5TIE3 1220 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PLEKHA7Q6IQ23 1121 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 NPNTQ6UXI9 565 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ACAD11Q709F0 780 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 MAVSQ7Z434 540 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 POLNQ7Z5Q5 900 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 DHDDSQ86SQ9 333 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SESTD1Q86VW0 696 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM161BQ8NDZ6 487 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 SLC35B2Q8TB61 432 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 GDPD5Q8WTR4 605 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PPP2R3CQ969Q6 453 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM206Q9H813 350 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 LIN28AQ9H9Z2 209 aaKnown RBP5.06□□□□□ -1.6
LIMA1-214ENST00000552783 KMT5AQ9NQR1 393 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ANGPTL2Q9UKU9 493 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 FZD1Q9UP38 647 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 COMMD3-BMI1R4GMX3 469 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF536O15090 1300 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF541Q9H0D2 1346 aa5.06□□□□□ -1.6
LIMA1-214ENST00000552783 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-214ENST00000552783 A0A0B4J269 797 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 A0A0J9YVX5 310 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 LOC100653049A0A140TA62 436 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 TRIM49D1C9J1S8 452 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 H3BNX3 289 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 KRT34O76011 436 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms