RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MAP1BP46821 2468 aaKnown RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 ZNF142P52746 1687 aaPredicted RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 PMPCBO75439 489 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 USP10Q14694 798 aaKnown RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 MORF4L2Q15014 288 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 GLB1LQ6UWU2 654 aa16.93■□□□□ 0.3
CUX1-213ENST00000549414 AJAP1Q9UKB5 411 aaPredicted RBP16.93■□□□□ 0.3
CUX1-213ENST00000549414 GOLGA8CPA6NN73 597 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 FOXR2Q6PJQ5 311 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 RMDN2Q96LZ7 410 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 SEPT5Q99719 369 aaPredicted RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 MANSC1Q9H8J5 431 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 CYP3A43Q9HB55 503 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 DONSONQ9NYP3 566 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 PHTF1Q9UMS5 762 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 MCF2P10911 925 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 TARSP26639 723 aaKnown RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 YWHAHQ04917 246 aaPredicted RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 CHI3L2Q15782 390 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 CELF3Q5SZQ8 465 aaKnown RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 SIAH1Q8IUQ4 282 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 LRRN4Q8WUT4 740 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 VCPIP1Q96JH7 1222 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 MYCBPQ99417 103 aaPredicted RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 UBP1Q9NZI7 540 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 KIAA1257Q9ULG3 409 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 PGM1P36871 562 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 PNPLA4P41247 253 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 BCAT1P54687 386 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 ACAD11Q709F0 780 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 RIBC1Q8N443 379 aaPredicted RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 SCG3Q8WXD2 468 aaKnown RBP16.92■□□□□ 0.3
CUX1-213ENST00000549414 EDEM1Q92611 657 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 SGF29Q96ES7 293 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 WNK4Q96J92 1243 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 CDT1Q9H211 546 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 EPS15L1Q9UBC2 864 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 TJP2Q9UDY2 1190 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 BEX3Q00994 111 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 CDC26Q8NHZ8 85 aa16.92■□□□□ 0.3
CUX1-213ENST00000549414 URB1O60287 2271 aaKnown RBP16.91■□□□□ 0.3
CUX1-213ENST00000549414 NCANO14594 1321 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 LOC100653049A0A140TA62 436 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 RBAK-RBAKDNI3L0D1 243 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 C2CD2LO14523 706 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 KRT34O76011 436 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 DRP2Q13474 957 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.91■□□□□ 0.37e-7■■■■■ 55.8
CUX1-213ENST00000549414 DDX20Q9UHI6 824 aaKnown RBP16.91■□□□□ 0.3
CUX1-213ENST00000549414 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.91■□□□□ 0.3
CUX1-213ENST00000549414 ZWINTO95229 277 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 CYP1A2P05177 515 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 ETFBP38117 255 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 ELK3P41970 407 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 TAS2R40P59535 323 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 LONP2Q86WA8 852 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 PCDH9Q9HC56 1237 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 KRT82Q9NSB4 513 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 COG5Q9UP83 839 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 ROBO1Q9Y6N7 1651 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 TCRBV7S2A1N4TA0A589 114 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 DNALI1O14645 258 aaPredicted RBP16.91■□□□□ 0.3
CUX1-213ENST00000549414 PLA2G6O60733 806 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 POLBP06746 335 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 FCGRTP55899 365 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 MGAT5BQ3V5L5 792 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 FSCBQ5H9T9 825 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 ABHD15Q6UXT9 468 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 RGS9BPQ6ZS82 235 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 TASP1Q9H6P5 420 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 WDCPQ9H6R7 721 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 ANGPTL2Q9UKU9 493 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 SLC39A10Q9ULF5 831 aa16.91■□□□□ 0.3
CUX1-213ENST00000549414 SPIRE1Q08AE8 756 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 CUL3Q13618 768 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 MIB1Q86YT6 1006 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 C3orf20Q8ND61 904 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 SLC2A14Q8TDB8 520 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 PTPRN2Q92932 1015 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 UMODL1Q5DID0 1318 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 IL31Q6EBC2 164 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 DAW1Q8N136 415 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 PIP4K2CQ8TBX8 421 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 SLC26A7Q8TE54 656 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 E2F7Q96AV8 911 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 ASB7Q9H672 318 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 STOML1Q9UBI4 398 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 MAFO75444 373 aaPredicted RBP16.9■□□□□ 0.3
CUX1-213ENST00000549414 SPAG6O75602 509 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 LYPLA2O95372 231 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 POMCP01189 267 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 CYP2F1P24903 491 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 ATICP31939 592 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 NOMO3P69849 1222 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 ADIGQ0VDE8 80 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 TTC39BQ5VTQ0 682 aaPredicted RBP16.9■□□□□ 0.3
CUX1-213ENST00000549414 SLFN11Q7Z7L1 901 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 NR2E1Q9Y466 385 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 ZNF541Q9H0D2 1346 aa16.9■□□□□ 0.3
CUX1-213ENST00000549414 CASQ2O14958 399 aaPredicted RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms