RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 AGAP1Q9UPQ3 857 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 STYXL1Q9Y6J8 313 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 TNRC6BQ9UPQ9 1833 aaKnown RBP13.66□□□□□ -0.22
SCAF11-208ENST00000546534 GON4LQ3T8J9 2241 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 ITPR1Q14643 2758 aa13.66□□□□□ -0.22
SCAF11-208ENST00000546534 ADAMTS20P59510 1910 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 VWA3AA6NCI4 1184 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 SCAMP3O14828 347 aaKnown RBP13.65□□□□□ -0.22
SCAF11-208ENST00000546534 APODP05090 189 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 ITGB3P05106 788 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 EMP3P54852 163 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 WNT7BP56706 349 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 MYL7Q01449 175 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 POU5F1Q01860 360 aaKnown RBP13.65□□□□□ -0.22
SCAF11-208ENST00000546534 SLFN12LQ6IEE8 588 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 RHBDF2Q6PJF5 856 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 C12orf40Q86WS4 652 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 TMEM86AQ8N2M4 240 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 MINDY1Q8N5J2 469 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 FUBP3Q96I24 572 aaKnown RBP eCLIP13.65□□□□□ -0.22
SCAF11-208ENST00000546534 CAMK1GQ96NX5 476 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 ZHX3Q9H4I2 956 aa13.65□□□□□ -0.22
SCAF11-208ENST00000546534 TCHHQ07283 1943 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 A0A0A0MRY4 1105 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 ARHGAP33O14559 1287 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 GABRDO14764 452 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 AP5Z1O43299 807 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 SH3BP5O60239 455 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 ATP2C2O75185 946 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 IL18RAPO95256 599 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 EIF2DP41214 584 aaKnown RBP13.64□□□□□ -0.23
SCAF11-208ENST00000546534 GRIA2P42262 883 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 MAGEA11P43364 429 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 PDE6CP51160 858 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 USP46P62068 366 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 TFAMQ00059 246 aaKnown RBP13.64□□□□□ -0.23
SCAF11-208ENST00000546534 RPL6Q02878 288 aaKnown RBP13.64□□□□□ -0.23
SCAF11-208ENST00000546534 KDSRQ06136 332 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 RESTQ13127 1097 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 HNRNPDQ14103 355 aaKnown RBP13.64□□□□□ -0.23
SCAF11-208ENST00000546534 NT5DC4Q86YG4 428 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 C1orf127Q8N9H9 656 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 POMGNT1Q8WZA1 660 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 ZDHHC16Q969W1 377 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 FAM84AQ96KN4 292 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 RNF38Q9H0F5 515 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 ARHGEF4Q9NR80 690 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 BLOC1S4Q9NUP1 217 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 DNAAF2Q9NVR5 837 aaKnown RBP13.64□□□□□ -0.23
SCAF11-208ENST00000546534 SMPD4Q9NXE4 827 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 TRPM5Q9NZQ8 1165 aa13.64□□□□□ -0.23
SCAF11-208ENST00000546534 NBEAQ8NFP9 2946 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ANAPC1Q9H1A4 1944 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 KRT18P05783 430 aaKnown RBP13.63□□□□□ -0.23
SCAF11-208ENST00000546534 PFKLP17858 780 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 GABRG2P18507 467 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 PLCG1P19174 1290 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 PCSK1P29120 753 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ADSSP30520 456 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ABCD1P33897 745 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 TNFRSF4P43489 277 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 SLC7A9P82251 487 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ZNF33AQ06730 810 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 MCM6Q14566 821 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 TRIP6Q15654 476 aaKnown RBP13.63□□□□□ -0.23
SCAF11-208ENST00000546534 FAM171BQ6P995 826 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 SLC36A4Q6YBV0 504 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 RABEPKQ7Z6M1 372 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ADGRF2Q8IZF7 708 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 PNPLA1Q8N8W4 532 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 CXorf38Q8TB03 319 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ADAMTS14Q8WXS8 1223 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 COL26A1Q96A83 441 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 SPATA17Q96L03 361 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 CCDC86Q9H6F5 360 aaKnown RBP13.63□□□□□ -0.23
SCAF11-208ENST00000546534 GDAP2Q9NXN4 497 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 CFAP97Q9P2B7 532 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 SNX9Q9Y5X1 595 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 CPQQ9Y646 472 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 PI4KAP42356 2102 aa13.63□□□□□ -0.23
SCAF11-208ENST00000546534 ZNF840PA6NDX5 716 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 SLC9A3R1O14745 358 aaPredicted RBP13.62□□□□□ -0.23
SCAF11-208ENST00000546534 TBCAO75347 108 aaKnown RBP13.62□□□□□ -0.23
SCAF11-208ENST00000546534 ADH1CP00326 375 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 FTH1P19P0C7X4 201 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 ADH5P11766 374 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 BDNFP23560 247 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 LHX1P48742 406 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 SOWAHAQ2M3V2 549 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 RILPL1Q5EBL4 403 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 CCNI2Q6ZMN8 369 aaPredicted RBP13.62□□□□□ -0.23
SCAF11-208ENST00000546534 C4orf50Q6ZRC1 276 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 DENND5BQ6ZUT9 1274 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 SLC41A1Q8IVJ1 513 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 PHTF2Q8N3S3 785 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 CSGALNACT2Q8N6G5 542 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 LRRC52Q8N7C0 313 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 KIAA1958Q8N8K9 716 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 ZSWIM2Q8NEG5 633 aa13.62□□□□□ -0.23
SCAF11-208ENST00000546534 HNRNPLLQ8WVV9 542 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms