RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ALDH1A3P47895 512 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 PSEN1P49768 467 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 GALCP54803 685 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ARPP19P56211 112 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 MAP3K7CLP57077 242 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 PTP4A2Q12974 167 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 VEPH1Q14D04 833 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ARHGAP29Q52LW3 1261 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 PLEKHA7Q6IQ23 1121 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 PMF1Q6P1K2 205 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ITIH5Q86UX2 942 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 NUP93Q8N1F7 819 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ARHGAP18Q8N392 663 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ATAD1Q8NBU5 361 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ZMIZ2Q8NF64 920 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 CPA5Q8WXQ8 436 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 OVCA2Q8WZ82 227 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 MCRS1Q96EZ8 462 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ZNF830Q96NB3 372 aaPredicted RBP16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 CPXM1Q96SM3 734 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 RHOBTB2Q9BYZ6 727 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ZNF576Q9H609 170 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 ST7Q9NRC1 585 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 IL37Q9NZH6 218 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 REXO2Q9Y3B8 237 aaKnown RBP16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 USP3Q9Y6I4 520 aa16.87■□□□□ 0.29
PRPF40A-212ENST00000545856 HHLA1C9JL84 531 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 ADAM12O43184 909 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 TGM5O43548 720 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 CALCAP01258 141 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 TUBB4AP04350 444 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 HNRNPA1P09651 372 aaKnown RBP eCLIP16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 SRGAP2BP0DMP2 458 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 DESP17661 470 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 RPL17P18621 184 aaKnown RBP16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 PPP3CCP48454 512 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 CLCN4P51793 760 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 DUSP4Q13115 394 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 MGAT5BQ3V5L5 792 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 EFHC1Q5JVL4 640 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 PM20D1Q6GTS8 502 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 MMS22LQ6ZRQ5 1243 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 DENND5BQ6ZUT9 1274 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 SLC26A9Q7LBE3 791 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 ZSCAN30Q86W11 494 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 GPIHBP1Q8IV16 184 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 ACRBPQ8NEB7 543 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 PDZD8Q8NEN9 1154 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 FNIP1Q8TF40 1166 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 ZNF653Q96CK0 615 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 TRMT2BQ96GJ1 504 aaKnown RBP16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 NCAPGQ9BPX3 1015 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 C11orf70Q9BRQ4 267 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 TTLL2Q9BWV7 592 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 TAS2R14Q9NYV8 317 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 MYO1AQ9UBC5 1043 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 UXTQ9UBK9 157 aaPredicted RBP16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 CNOT8Q9UFF9 292 aaKnown RBP16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 CYTH4Q9UIA0 394 aa16.86■□□□□ 0.29
PRPF40A-212ENST00000545856 HIDE1A8MVS5 230 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 E5RJQ4 531 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 PRRG1O14668 218 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 TNFRSF10BO14763 440 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 NCK2O43639 380 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 VNN2O95498 520 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 MSNP26038 577 aaKnown RBP16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 CA8P35219 290 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 EPHB3P54753 998 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 CCDC142Q17RM4 750 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 DNAJC24Q6P3W2 148 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 XYLT1Q86Y38 959 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 CCAR2Q8N163 923 aaKnown RBP16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 LEMD2Q8NC56 503 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 AUTS2Q8WXX7 1259 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 MYRFLQ96LU7 910 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 PGLYRP2Q96PD5 576 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 SEPT5Q99719 369 aaPredicted RBP16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 LPIN3Q9BQK8 851 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 DESI2Q9BSY9 194 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 CYP4F11Q9HBI6 524 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 DZANK1Q9NVP4 752 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 ZDHHC7Q9NXF8 308 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 RRN3Q9NYV6 651 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 COLQQ9Y215 455 aaPredicted RBP16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 YIPF1Q9Y548 306 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 INSL5Q9Y5Q6 135 aa16.85■□□□□ 0.29
PRPF40A-212ENST00000545856 DENND4CQ5VZ89 1909 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 SIGLEC16A6NMB1 481 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 TMCO5BA8MYB1 307 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 HSF2BPO75031 334 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 FGF19O95750 216 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 ZBED1O96006 694 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 ARHGAP25P42331 645 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 SLC5A3P53794 718 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 SLC6A3Q01959 620 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 DUSP6Q16828 381 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 OLFML1Q6UWY5 402 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 SPRED2Q7Z698 418 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 SCN4BQ8IWT1 228 aa16.84■□□□□ 0.29
PRPF40A-212ENST00000545856 ELMOD1Q8N336 334 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms