RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CDC23Q9UJX2 597 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 GUCA1BQ9UMX6 200 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 ITPR3Q14573 2671 aa8.91□□□□□ -0.98
CHD4-208ENST00000540960 ADAMTS9Q9P2N4 1935 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 COL5A1P20908 1838 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 F8VZ95 297 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 RNF225M0QZC1 329 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 TULP1O00294 542 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 OGTO15294 1046 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 PHACTR2O75167 634 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 PRKCBP05771 671 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 TNNI1P19237 187 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 TNFAIP3P21580 790 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 KLK7P49862 253 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 NAP1L1P55209 391 aaKnown RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 PTENP60484 403 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 IRX4P78413 519 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 CFHR1Q03591 330 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 MCL1Q07820 350 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 PRPF4BQ13523 1007 aaKnown RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 CAPSQ13938 189 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 GRM2Q14416 872 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 MTF1Q14872 753 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 DRAP1Q14919 205 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 KIZQ2M2Z5 673 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 ASTE1Q2TB18 679 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 PLK5Q496M5 336 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 HGSNATQ68CP4 663 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 TANGO2Q6ICL3 276 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 EFCAB12Q6NXP0 572 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 MPZL3Q6UWV2 235 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 TRIM72Q6ZMU5 477 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 IRF2BP2Q7Z5L9 587 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 WDR49Q8IV35 697 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 KIAA0319LQ8IZA0 1049 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 NME8Q8N427 588 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 METTL13Q8N6R0 699 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 RDH13Q8NBN7 331 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 RNF149Q8NC42 400 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 ACRBPQ8NEB7 543 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 PIP4K2CQ8TBX8 421 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 ASAP3Q8TDY4 903 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 BSNDQ8WZ55 320 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 CCDC127Q96BQ5 260 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 TRIM11Q96F44 468 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 ZC3H10Q96K80 434 aaKnown RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 ADPGKQ9BRR6 497 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 FAM213AQ9BRX8 229 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 DUSP15Q9H1R2 295 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 FZD8Q9H461 694 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 UBE2TQ9NPD8 197 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 MRPL17Q9NRX2 175 aaKnown RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 RBAKQ9NYW8 714 aaPredicted RBP8.9□□□□□ -0.98
CHD4-208ENST00000540960 TNFSF13BQ9Y275 285 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 SAR1BQ9Y6B6 198 aa8.9□□□□□ -0.98
CHD4-208ENST00000540960 RELNP78509 3460 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 NOTCH2Q04721 2471 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 A0A087WV48 116 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 SMIM35A0A1B0GVV1 85 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 BCLAF3A2AJT9 711 aaKnown RBP8.89□□□□□ -0.99
CHD4-208ENST00000540960 TMEM150BA6NC51 233 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 MEIS3P2A8K0S8 358 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ANKRD63C9JTQ0 380 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 MAN2B1O00754 1011 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 DCLK1O15075 740 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 TGM5O43548 720 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 WISP1O95388 367 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 CLTAP09496 248 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 SRGAP2CP0DJJ0 459 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 MCF2P10911 925 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 GZMAP12544 262 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 P4HA1P13674 534 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ITPKBP27987 946 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ADSSP30520 456 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 AXLP30530 894 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ARHGAP25P42331 645 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 PAFAH1B1P43034 410 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 GCLMP48507 274 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 DUOXA2Q1HG44 320 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 SGSM1Q2NKQ1 1148 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 DCAF4L1Q3SXM0 396 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ATF7IP2Q5U623 682 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ALKBH5Q6P6C2 394 aaKnown RBP8.89□□□□□ -0.99
CHD4-208ENST00000540960 MTHFD1LQ6UB35 978 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 PIP4P1Q86T03 277 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 ZNF280BQ86YH2 543 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 RHPN2Q8IUC4 686 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 CBWD2Q8IUF1 395 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 GLYCTKQ8IVS8 523 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 KSR1Q8IVT5 923 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 FAM181AQ8N9Y4 354 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 CTNNBL1Q8WYA6 563 aaPredicted RBP8.89□□□□□ -0.99
CHD4-208ENST00000540960 ING5Q8WYH8 240 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 GOLGA1Q92805 767 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 LPPQ93052 612 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 RPS6KC1Q96S38 1066 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 CGRRF1Q99675 332 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 GCOM2Q9BZD3 368 aaPredicted RBP8.89□□□□□ -0.99
CHD4-208ENST00000540960 POLD4Q9HCU8 107 aa8.89□□□□□ -0.99
CHD4-208ENST00000540960 SIX2Q9NPC8 291 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms