RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 MAML1Q92585 1016 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 CHP1Q99653 195 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 TRIM55Q9BYV6 548 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 UBE2OQ9C0C9 1292 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 SEMA6BQ9H3T3 888 aa14.78□□□□□ -0.04
COLCA1-204ENST00000540738 ZCCHC17Q9NP64 241 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 XPO7Q9UIA9 1087 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 APOBEC2Q9Y235 224 aaKnown RBP14.78□□□□□ -0.04
COLCA1-204ENST00000540738 ITGALP20701 1170 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 SPRP35270 261 aaPredicted RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 ATP5C1P36542 298 aaKnown RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 EPM2AIP1Q7L775 607 aaPredicted RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 LZTR1Q8N653 840 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 SUSD6Q92537 303 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 RSRC1Q96IZ7 334 aaKnown RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 TBCBQ99426 244 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 TRIM15Q9C019 465 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 TLE6Q9H808 572 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 G3BP2Q9UN86 482 aaKnown RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 PLAAQ9Y263 795 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 PCDH8O95206 1070 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 CXCL14O95715 111 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 GABPB1Q06547 395 aaPredicted RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 C1QBPQ07021 282 aaKnown RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 ZNF268Q14587 947 aaPredicted RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 GPR20Q99678 358 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 RNPEPQ9H4A4 650 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 FAM105AQ9NUU6 356 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 SNX12Q9UMY4 172 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 C2CD2Q9Y426 696 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.77□□□□□ -0.04
COLCA1-204ENST00000540738 LMO7Q8WWI1 1683 aa14.77□□□□□ -0.04
COLCA1-204ENST00000540738 NALCNQ8IZF0 1738 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 ATMINO43313 823 aaPredicted RBP14.77□□□□□ -0.05
COLCA1-204ENST00000540738 MMEP08473 750 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 KCNA2P16389 499 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 FXR1P51114 621 aaKnown RBP eCLIP14.77□□□□□ -0.05
COLCA1-204ENST00000540738 ADIGQ0VDE8 80 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 SLC45A4Q5BKX6 768 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 HABP4Q5JVS0 413 aaKnown RBP14.77□□□□□ -0.05
COLCA1-204ENST00000540738 PSRC1Q6PGN9 363 aaPredicted RBP14.77□□□□□ -0.05
COLCA1-204ENST00000540738 RAMP2O60895 175 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 PMPCBO75439 489 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 FIGNQ5HY92 759 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 C1orf186Q6ZWK4 172 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 FAM131BQ86XD5 332 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 SLC2A14Q8TDB8 520 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 C11orf49Q9H6J7 331 aa14.77□□□□□ -0.05
COLCA1-204ENST00000540738 C20orf96Q9NUD7 363 aaPredicted RBP14.77□□□□□ -0.05
COLCA1-204ENST00000540738 GJB1P08034 283 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 SLC12A3P55017 1021 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 HECTD3Q5T447 861 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 IL31RAQ8NI17 732 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 OXCT2Q9BYC2 517 aaPredicted RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 ABCC13Q9NSE7 274 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 BTBD7Q9P203 1132 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 STK38LQ9Y2H1 464 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 ITGB5P18084 799 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 USP10Q14694 798 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 DENND5BQ6ZUT9 1274 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 RXFP2Q8WXD0 754 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 BRI3BPQ8WY22 251 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 RUBCNQ92622 972 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 ELMO2Q96JJ3 720 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 PURBQ96QR8 312 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 UPF3AQ9H1J1 476 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 CRTAMO95727 393 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 POLR2EP19388 210 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 LZICQ8WZA0 190 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 C18orf25Q96B23 403 aaPredicted RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 PKD2L2Q9NZM6 624 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 PLAGL2Q9UPG8 496 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 CHD2O14647 1828 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 KLRG2A4D1S0 409 aaPredicted RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 CHRM3P20309 590 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 GRM5P41594 1212 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 GLUD2P49448 558 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 HDAC4P56524 1084 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 CAPSQ13938 189 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 HIST2H2ACQ16777 129 aaPredicted RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 CCDC157Q569K6 752 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 HIST2H2AA3Q6FI13 130 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 HOMEZQ8IX15 550 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 CCDC124Q96CT7 223 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 ASTN2O75129 1339 aaPredicted RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 LYPLA2O95372 231 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 PTPN1P18031 435 aaKnown RBP14.76□□□□□ -0.05
COLCA1-204ENST00000540738 NR1D1P20393 614 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 BDNFP23560 247 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 ATP13A1Q9HD20 1204 aa14.76□□□□□ -0.05
COLCA1-204ENST00000540738 ANKRD26Q9UPS8 1709 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 IGSF6O95976 241 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 CHKAP35790 457 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 MCL1Q07820 350 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 TUSC3Q13454 348 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 FNDC3BQ53EP0 1204 aaKnown RBP14.75□□□□□ -0.05
COLCA1-204ENST00000540738 CCNJLQ8IV13 435 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 BLOC1S5Q8TDH9 187 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms