RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ZBTB34Q8NCN2 500 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 OR6B3Q8NGW1 331 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 MMS19Q96T76 1030 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 ATP6V0A4Q9HBG4 840 aa4.4□□□□□ -1.71
VPS13A-213ENST00000539950 SCAF8Q9UPN6 1271 aaKnown RBP4.4□□□□□ -1.71
VPS13A-213ENST00000539950 hCG_2014768A0A024R1R8 64 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 KCNAB3O43448 404 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 USP1O94782 785 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 FGAP02671 866 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 PDGFRBP09619 1106 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 ATP5F1P24539 256 aaPredicted RBP4.39□□□□□ -1.71
VPS13A-213ENST00000539950 AGFG1P52594 562 aaKnown RBP4.39□□□□□ -1.71
VPS13A-213ENST00000539950 SLC13A2Q13183 592 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 MLC1Q15049 377 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 TRIP6Q15654 476 aaKnown RBP4.39□□□□□ -1.71
VPS13A-213ENST00000539950 AWAT2Q6E213 333 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 EPM2AIP1Q7L775 607 aaPredicted RBP4.39□□□□□ -1.71
VPS13A-213ENST00000539950 SIRT6Q8N6T7 355 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 IL31RAQ8NI17 732 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 MAML1Q92585 1016 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 RSPRY1Q96DX4 576 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 LPAR3Q9UBY5 353 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 AMFRQ9UKV5 643 aa4.39□□□□□ -1.71
VPS13A-213ENST00000539950 E2F8A0AVK6 867 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 UBE2Q2LH0YL09 131 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 FCHO1O14526 889 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 TBC1D4O60343 1298 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 NTN1O95631 604 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 MYCLP12524 364 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-213ENST00000539950 IL1R2P27930 398 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 NR4A2P43354 598 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 FAM187BQ17R55 369 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 ANO6Q4KMQ2 910 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 CERCAMQ5T4B2 595 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 DCAF12L1Q5VU92 463 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.38□□□□□ -1.71
VPS13A-213ENST00000539950 ZDHHC24Q6UX98 284 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 NPNTQ6UXI9 565 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 OVCH2Q7RTZ1 564 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 TECPR1Q7Z6L1 1165 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 EFHD1Q9BUP0 239 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 B3GNT5Q9BYG0 378 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 TRNAU1APQ9NX07 287 aaKnown RBP4.38□□□□□ -1.71
VPS13A-213ENST00000539950 DDX56Q9NY93 547 aaKnown RBP4.38□□□□□ -1.71
VPS13A-213ENST00000539950 TFCP2L1Q9NZI6 479 aa4.38□□□□□ -1.71
VPS13A-213ENST00000539950 CES2O00748 559 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 PHGDHO43175 533 aaKnown RBP4.37□□□□□ -1.71
VPS13A-213ENST00000539950 PMPCBO75439 489 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 TUSC2O75896 110 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 EN2P19622 333 aaPredicted RBP4.37□□□□□ -1.71
VPS13A-213ENST00000539950 GKP32189 559 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 CCT4P50991 539 aaKnown RBP4.37□□□□□ -1.71
VPS13A-213ENST00000539950 BCAT1P54687 386 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 IGBP1P78318 339 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 RAB32Q13637 225 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 CCNIQ14094 377 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 ZNF268Q14587 947 aaPredicted RBP4.37□□□□□ -1.71
VPS13A-213ENST00000539950 AWAT1Q58HT5 328 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 PXDC1Q5TGL8 231 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 MEX3CQ5U5Q3 659 aaKnown RBP4.37□□□□□ -1.71
VPS13A-213ENST00000539950 SWSAP1Q6NVH7 229 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 ZNF813Q6ZN06 617 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 SFTPA1Q8IWL2 248 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 SPARTQ8N0X7 666 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 NANOGP1Q8N7R0 232 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 OR56A3Q8NH54 315 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 PRSS3P2Q8NHM4 247 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 DNAJB14Q8TBM8 379 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 CDH19Q9H159 772 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 ZSCAN32Q9NX65 697 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 DRG1Q9Y295 367 aaKnown RBP4.37□□□□□ -1.71
VPS13A-213ENST00000539950 AFG3L2Q9Y4W6 797 aa4.37□□□□□ -1.71
VPS13A-213ENST00000539950 TRIM38O00635 465 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 ADAM10O14672 748 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 TBX3O15119 743 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 GCATO75600 419 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 SLC7A1P30825 629 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 LMAN2Q12907 356 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 LRRC41Q15345 812 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 KCTD20Q7Z5Y7 419 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 MICU3Q86XE3 530 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 KRT73Q86Y46 540 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 NRACQ8N912 160 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 ADAMTS18Q8TE60 1221 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 CTHRC1Q96CG8 243 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 HMCESQ96FZ2 354 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 FYTTD1Q96QD9 318 aaKnown RBP4.36□□□□□ -1.71
VPS13A-213ENST00000539950 FAM118BQ9BPY3 351 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 TMEM79Q9BSE2 394 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 ZNF518BQ9C0D4 1074 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 XPNPEP3Q9NQH7 507 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 STK32BQ9NY57 414 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 ZIM2Q9NZV7 527 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 DNMT3BQ9UBC3 853 aaKnown RBP4.36□□□□□ -1.71
VPS13A-213ENST00000539950 CDY1Q9Y6F8 540 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 USP19O94966 1318 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 SHROOM4Q9ULL8 1493 aa4.36□□□□□ -1.71
VPS13A-213ENST00000539950 PSMD9O00233 223 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 IKBKBO14920 756 aa4.35□□□□□ -1.71
VPS13A-213ENST00000539950 DSCR3O14972 297 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms