RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 IGSF9Q9P2J2 1179 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 CPA4Q9UI42 421 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 NUP188Q5SRE5 1749 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 PP2D1A8MPX8 630 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 CHEK2O96017 543 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 TMEM253P0C7T8 217 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 ABCB4P21439 1286 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 ADCY8P40145 1251 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC5A3P53794 718 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 KRT25Q7Z3Z0 450 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 C4orf33Q8N1A6 199 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 PRELID2Q8N945 189 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 GLT8D2Q9H1C3 349 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 ARMC7Q9H6L4 198 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 MANSC1Q9H8J5 431 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 ERVK-11Q9UQG0 969 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 MRPL11Q9Y3B7 192 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 A0A088AWK7 358 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 HIRAP54198 1017 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 CSE1LP55060 971 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 PRMT2P55345 433 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 ZNF200P98182 395 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 KRT17Q04695 432 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 CTU1Q7Z7A3 348 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 GALNT4Q8N4A0 578 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 KIAA0895Q8NCT3 520 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 PPCSQ9HAB8 311 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC7A8Q9UHI5 535 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 SBF2Q86WG5 1849 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 I3L4J1 428 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 AOC2O75106 756 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 MTRF1O75570 445 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 STAM2O75886 525 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 JAK1P23458 1154 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 LBX1P52954 281 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 PKN2Q16513 984 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 WDR45BQ5MNZ6 344 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 LMBRD2Q68DH5 695 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 RBM15BQ8NDT2 890 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 IMPG2Q9BZV3 1241 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 SPEF2Q9C093 1822 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CCNT1O60563 726 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 SIN3BO75182 1162 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CFBP00751 764 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CTNNA2P26232 953 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 MAPK4P31152 587 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 E2F2Q14209 437 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CYP2U1Q7Z449 544 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 GPR141Q7Z602 305 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 TSPAN14Q8NG11 270 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 MAML1Q92585 1016 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 SMYD3Q9H7B4 428 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 WNK3Q9BYP7 1800 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 FARP2O94887 1054 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 PLS3P13797 630 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CCDC130P13994 396 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 RAG1P15918 1043 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 RPA3P35244 121 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 ALDH1A3P47895 512 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 RNF207Q6ZRF8 634 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 TERB1Q8NA31 727 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 PPP4R1Q8TF05 950 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 KLC2Q9H0B6 622 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 RPAP3Q9H6T3 665 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CYLDQ9NQC7 956 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 FBXO6Q9NRD1 293 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 SEPT3Q9UH03 358 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CFAP99D6REC4 459 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 ENO2P09104 434 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 CYP2B6P20813 491 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 LRP8Q14114 963 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 BLIDQ8IZY5 108 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 SPERTQ8NA61 448 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC43A3Q8NBI5 491 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 TNFRSF25Q93038 417 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 BCAP29Q9UHQ4 241 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 AP4B1Q9Y6B7 739 aa11.31□□□□□ -0.6
CLSTN3-207ENST00000537408 NCANO14594 1321 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ANKRD34BA5PLL1 514 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ANKRD62A6NC57 917 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 FUCA1P04066 466 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 STAT1P42224 750 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 SPOPLQ6IQ16 392 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 CHPT1Q8WUD6 406 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 DCUN1D1Q96GG9 259 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 NUP85Q9BW27 656 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 WWP1Q9H0M0 922 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 VPS45Q9NRW7 570 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 RGPD3A6NKT7 1758 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 RGPD4Q7Z3J3 1758 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 SOBPA7XYQ1 873 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 GIPC1O14908 333 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 KMOO15229 486 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC25A27O95847 323 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 PRKCIP41743 596 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 KRT6CP48668 564 aa11.3□□□□□ -0.6
CLSTN3-207ENST00000537408 ITGA8P53708 1063 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms