RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 BAATQ14032 418 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-209ENST00000537178 TRIM48Q8IWZ4 208 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 SRBD1Q8N5C6 995 aaKnown RBP11.02□□□□□ -0.65
CLIP1-209ENST00000537178 SGF29Q96ES7 293 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 OLFM1Q99784 485 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 FRMD8P1Q9BZ68 369 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-209ENST00000537178 RGS18Q9NS28 235 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 GTF3C4Q9UKN8 822 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 FER1L4A9Z1Z3 1794 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 C2orf81A6NN90 581 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 DYNC1LI2O43237 492 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-209ENST00000537178 TGM2P21980 687 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 MLH1P40692 756 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 DPYDQ12882 1025 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 DNAJC3Q13217 504 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 SLC29A2Q14542 456 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 SF3B3Q15393 1217 aaKnown RBP11.02□□□□□ -0.65
CLIP1-209ENST00000537178 PTGISQ16647 500 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 SLC40A1Q9NP59 571 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 ADAM30Q9UKF2 790 aa11.02□□□□□ -0.65
CLIP1-209ENST00000537178 CPDO75976 1380 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 NPHP3-ACAD11A0A0J9YXS1 232 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 C19orf81C9J6K1 198 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 TIMM44O43615 452 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 COILP38432 576 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 RAD23AP54725 363 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 RPS7P62081 194 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 MMRN1Q13201 1228 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 DDX39BQ13838 428 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 SHROOM1Q2M3G4 852 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ATF7IP2Q5U623 682 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 CYP4Z1Q86W10 505 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 SYN2Q92777 582 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 SH3GL1Q99961 368 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 TSEN34Q9BSV6 310 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 AGXT2Q9BYV1 514 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 UTP6Q9NYH9 597 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 SMARCAL1Q9NZC9 954 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 IL1RAPL1Q9NZN1 696 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 IQCA1LA6NCM1 817 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 VPS26AO75436 327 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 C6orf222P0C671 652 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 FAM200BP0CF97 657 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 GYS1P13807 737 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 PSMC3P17980 439 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 KRT20P35900 424 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 KCNJ1P48048 391 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 PEX5P50542 639 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 SEC24CP53992 1094 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 PURAQ00577 322 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 NR1I3Q14994 352 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 TMEM132BQ14DG7 1078 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 CYP51A1Q16850 503 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 CCDC149Q6ZUS6 474 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 C11orf96Q7Z7L8 435 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 DPP10Q8N608 796 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ATP6V0D2Q8N8Y2 350 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 HPS3Q969F9 1004 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 PPP1R14AQ96A00 147 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ZNF333Q96JL9 665 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 CAMKK2Q96RR4 588 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 CINPQ9BW66 212 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ARHGEF3Q9NR81 526 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 MTMR4Q9NYA4 1195 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 E2F8A0AVK6 867 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 DYRK3O43781 588 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 CTSHP09668 335 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 MUTP22033 750 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 STK4Q13043 487 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 FAM180AQ6UWF9 173 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 KRT77Q7Z794 578 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 FAM71DQ8N9W8 422 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 TFB1MQ8WVM0 346 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 PNKPQ96T60 521 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 RIT2Q99578 217 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 KLHL31Q9H511 634 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 L2HGDHQ9H9P8 463 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 RPS6KL1Q9Y6S9 549 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 IGSF9BQ9UPX0 1349 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 KBTBD13C9JR72 458 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 TULP2O00295 520 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 FYNP06241 537 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ALDH1A3P47895 512 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 PKN2Q16513 984 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 C10orf120Q5SQS8 335 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 RIN3Q8TB24 985 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 SNRNP27Q8WVK2 155 aaKnown RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 RIN2Q8WYP3 895 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 COPS7BQ9H9Q2 264 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 NOD2Q9HC29 1040 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 MAN1C1Q9NR34 630 aa11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ZMYND8Q9ULU4 1186 aaPredicted RBP11.01□□□□□ -0.65
CLIP1-209ENST00000537178 ZNF839A8K0R7 811 aa11□□□□□ -0.65
CLIP1-209ENST00000537178 TRIM24O15164 1050 aa11□□□□□ -0.65
CLIP1-209ENST00000537178 PMPCBO75439 489 aa11□□□□□ -0.65
CLIP1-209ENST00000537178 NCAM1P13591 858 aa11□□□□□ -0.65
CLIP1-209ENST00000537178 ETFBP38117 255 aa11□□□□□ -0.65
CLIP1-209ENST00000537178 SARSP49591 514 aaKnown RBP11□□□□□ -0.65
CLIP1-209ENST00000537178 SERPINH1P50454 418 aaKnown RBP11□□□□□ -0.65
CLIP1-209ENST00000537178 SFSWAPQ12872 951 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms