RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CCDC112Q8NEF3 446 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 SCAMP5Q8TAC9 235 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 KCTD13Q8WZ19 329 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 ZNF830Q96NB3 372 aaPredicted RBP17.15■□□□□ 0.34
LSM1-204ENST00000522515 NOX5Q96PH1 765 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 EPN1Q9Y6I3 576 aaPredicted RBP17.15■□□□□ 0.34
LSM1-204ENST00000522515 E5RJQ4 531 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 RTN2O75298 545 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 LCP1P13796 627 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 CYLC1P35663 651 aaPredicted RBP17.15■□□□□ 0.34
LSM1-204ENST00000522515 EPHB3P54753 998 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 USP46P62068 366 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 ADAM15Q13444 863 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 CCDC122Q5T0U0 273 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 DENND5BQ6ZUT9 1274 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 RTL10Q7L3V2 364 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 TMEM110Q86TL2 294 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 NUP93Q8N1F7 819 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 CASP10Q92851 521 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 ISCUQ9H1K1 167 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 KCNF1Q9H3M0 494 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 LRRC4Q9HBW1 653 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 MTMR10Q9NXD2 777 aa17.15■□□□□ 0.34
LSM1-204ENST00000522515 SLC38A8A6NNN8 435 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 CCL16O15467 120 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 NDUFA10O95299 355 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 FTLP02792 175 aaPredicted RBP17.14■□□□□ 0.33
LSM1-204ENST00000522515 ERBB2P04626 1255 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 MMP8P22894 467 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 TKTL1P51854 596 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 ADIGQ0VDE8 80 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 IFRD2Q12894 506 aaPredicted RBP17.14■□□□□ 0.33
LSM1-204ENST00000522515 PLD1Q13393 1074 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 ELMSAN1Q6PJG2 1045 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 TMEM184AQ6ZMB5 413 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 MMS22LQ6ZRQ5 1243 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 PHF13Q86YI8 300 aaPredicted RBP17.14■□□□□ 0.33
LSM1-204ENST00000522515 C12orf76Q8N812 135 aaPredicted RBP17.14■□□□□ 0.33
LSM1-204ENST00000522515 FEZF2Q8TBJ5 459 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 CEP295NLQ96MC4 621 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 C11orf70Q9BRQ4 267 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 CYLDQ9NQC7 956 aa17.14■□□□□ 0.33
LSM1-204ENST00000522515 SPDYE4A6NLX3 237 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 LCA5LO95447 670 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 HMGA1P17096 107 aaKnown RBP17.13■□□□□ 0.33
LSM1-204ENST00000522515 HOXA9P31269 272 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 ACADSBP45954 432 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 GABRB2P47870 512 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 PTP4A2Q12974 167 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 VEPH1Q14D04 833 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 CYP4A22Q5TCH4 519 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 MON1BQ7L1V2 547 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 SCUBE3Q8IX30 993 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 MCOLN2Q8IZK6 566 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 PSMG2Q969U7 264 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 MIS12Q9H081 205 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 SYNCQ9H7C4 482 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 ZDHHC7Q9NXF8 308 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 IL37Q9NZH6 218 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 ADAM22Q9P0K1 906 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 MAGED2Q9UNF1 606 aaPredicted RBP17.13■□□□□ 0.33
LSM1-204ENST00000522515 USP3Q9Y6I4 520 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 GREB1Q4ZG55 1949 aa17.13■□□□□ 0.33
LSM1-204ENST00000522515 CCDC195A0A1B0GUA6 201 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 EIF3CLB5ME19 914 aaKnown RBP17.12■□□□□ 0.33
LSM1-204ENST00000522515 ARHGAP6O43182 974 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 PAPSS1O43252 624 aaPredicted RBP17.12■□□□□ 0.33
LSM1-204ENST00000522515 HNRNPA1P09651 372 aaKnown RBP eCLIP17.12■□□□□ 0.33
LSM1-204ENST00000522515 CSH1P0DML2 217 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 CSH2P0DML3 217 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 CTC1Q2NKJ3 1217 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 DNAJB7Q7Z6W7 309 aaPredicted RBP17.12■□□□□ 0.33
LSM1-204ENST00000522515 SIX6OS1Q8N1H7 587 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 IPO4Q8TEX9 1081 aaKnown RBP17.12■□□□□ 0.33
LSM1-204ENST00000522515 CLEC4CQ8WTT0 213 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 ZNF707Q96C28 371 aaPredicted RBP17.12■□□□□ 0.33
LSM1-204ENST00000522515 C18orf8Q96DM3 657 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 EIF3CQ99613 913 aaKnown RBP17.12■□□□□ 0.33
LSM1-204ENST00000522515 ULBP1Q9BZM6 244 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 DZANK1Q9NVP4 752 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 ASB3Q9Y575 518 aa17.12■□□□□ 0.33
LSM1-204ENST00000522515 RTN3O95197 1032 aaPredicted RBP17.11■□□□□ 0.33
LSM1-204ENST00000522515 USP17L7P0C7H9 530 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 FOSL2P15408 326 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 C1QBPQ07021 282 aaKnown RBP17.11■□□□□ 0.33
LSM1-204ENST00000522515 DLX2Q07687 328 aaPredicted RBP17.11■□□□□ 0.33
LSM1-204ENST00000522515 CCDC85BQ15834 202 aaPredicted RBP17.11■□□□□ 0.33
LSM1-204ENST00000522515 TAF12Q16514 161 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 PPP1R2P3Q6NXS1 205 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 ANKRD54Q6NXT1 300 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 TMC5Q6UXY8 1006 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 PHLDB2Q86SQ0 1253 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 ITIH5Q86UX2 942 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 XYLT1Q86Y38 959 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 ELMOD1Q8N336 334 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 MSANTD4Q8NCY6 345 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 ACRBPQ8NEB7 543 aa17.11■□□□□ 0.33
LSM1-204ENST00000522515 NDRG1Q92597 394 aaKnown RBP17.11■□□□□ 0.33
LSM1-204ENST00000522515 ZNF512Q96ME7 567 aaPredicted RBP17.11■□□□□ 0.33
LSM1-204ENST00000522515 DESI2Q9BSY9 194 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms