RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TMEM60Q9H2L4 133 aa8.22□□□□□ -1.09
SDCBP-208ENST00000520228 GGA3Q9NZ52 723 aa8.22□□□□□ -1.09
SDCBP-208ENST00000520228 ASTN2O75129 1339 aaPredicted RBP8.22□□□□□ -1.09
SDCBP-208ENST00000520228 DICER1Q9UPY3 1922 aaKnown RBP8.21□□□□□ -1.09
SDCBP-208ENST00000520228 A0A088AWK7 358 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 TCRBV7S2A1N4TA0A589 114 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 DRGXA6NNA5 263 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 GRXCR1A8MXD5 290 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 POMCP01189 267 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 MYBP10242 640 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 ACRV1P26436 265 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 MGAT1P26572 445 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 HTR1BP28222 390 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 PHKA1P46020 1223 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 AGFG1P52594 562 aaKnown RBP8.21□□□□□ -1.1
SDCBP-208ENST00000520228 RBM5P52756 815 aaKnown RBP eCLIP8.21□□□□□ -1.1
SDCBP-208ENST00000520228 ADAM17P78536 824 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 CREMQ03060 361 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 GALEQ14376 348 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 RRP1BQ14684 758 aaKnown RBP8.21□□□□□ -1.1
SDCBP-208ENST00000520228 PRKD1Q15139 912 aaPredicted RBP8.21□□□□□ -1.1
SDCBP-208ENST00000520228 HSP90AB4PQ58FF6 505 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 CHST15Q7LFX5 561 aaPredicted RBP8.21□□□□□ -1.1
SDCBP-208ENST00000520228 DGKHQ86XP1 1220 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 FAM90A1Q86YD7 464 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 ERC1Q8IUD2 1116 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 GPR108Q9NPR9 543 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 LMBRD1Q9NUN5 540 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 SIDT1Q9NXL6 827 aaKnown RBP8.21□□□□□ -1.1
SDCBP-208ENST00000520228 ABCF2Q9UG63 623 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 EXOC6BQ9Y2D4 811 aa8.21□□□□□ -1.1
SDCBP-208ENST00000520228 CCDC88AQ3V6T2 1871 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 GOLGA6L6A8MZA4 724 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 ADM5C9JUS6 153 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 MUSKO15146 869 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 SLC43A1O75387 559 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 CELF2O95319 508 aaKnown RBP8.2□□□□□ -1.1
SDCBP-208ENST00000520228 MTHFD1P11586 935 aaKnown RBP8.2□□□□□ -1.1
SDCBP-208ENST00000520228 ZNF20P17024 532 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 PRDX5P30044 214 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 PTTG1IPP53801 180 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 FLYWCH1Q4VC44 716 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 CCDC181Q5TID7 509 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 CST9Q5W186 159 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 DLK2Q6UY11 383 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 DNAJC5GQ8N7S2 189 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 ZBED3Q96IU2 234 aaPredicted RBP8.2□□□□□ -1.1
SDCBP-208ENST00000520228 WDCPQ9H6R7 721 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 PNPOQ9NVS9 261 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 ABT1Q9ULW3 272 aaKnown RBP8.2□□□□□ -1.1
SDCBP-208ENST00000520228 FPGT-TNNI3KV9GXZ4 949 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 MYH3P11055 1940 aa8.2□□□□□ -1.1
SDCBP-208ENST00000520228 SCN4AP35499 1836 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 CEP350Q5VT06 3117 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 LEFTY2O00292 366 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 UQCRFS1P1P0C7P4 283 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 SMARCA1P28370 1054 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 USP14P54578 494 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 PLS1Q14651 629 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 SPATS1Q496A3 300 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 CCDC158Q5M9N0 1113 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 KIAA0319LQ8IZA0 1049 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 NLGN4YQ8NFZ3 816 aaPredicted RBP8.19□□□□□ -1.1
SDCBP-208ENST00000520228 TEKT1Q969V4 418 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 PGBD4Q96DM1 585 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 PRMT6Q96LA8 375 aaPredicted RBP8.19□□□□□ -1.1
SDCBP-208ENST00000520228 NEU1Q99519 415 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 MRIQ9BWK5 157 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 TSC22D4Q9Y3Q8 395 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 PCDHAC2Q9Y5I4 1007 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 MAST3O60307 1309 aa8.19□□□□□ -1.1
SDCBP-208ENST00000520228 CLRN2A0PK11 232 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 PRSS29PA6NIE9 313 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 KIAA0391O15091 583 aaKnown RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 ALAS1P13196 640 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 SLC6A2P23975 617 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 CHN2P52757 468 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 RAB1AP62820 205 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 ANO6Q4KMQ2 910 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 TTC39AQ5SRH9 613 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 FAM102AQ5T9C2 384 aaPredicted RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 NPNTQ6UXI9 565 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 AACSQ86V21 672 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 TMPRSS6Q8IU80 811 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 APOBEC3FQ8IUX4 373 aaKnown RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 ZFPM1Q8IX07 1006 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 SPATA5Q8NB90 893 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 KIF1BPQ96EK5 621 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 CDCA5Q96FF9 252 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 SLC35A4Q96G79 324 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 CDK5RAP1Q96SZ6 601 aaKnown RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 B3GNT5Q9BYG0 378 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 GSTO2Q9H4Y5 243 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 AURKAIP1Q9NWT8 199 aaPredicted RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 JKAMPQ9P055 326 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 HMG20BQ9P0W2 317 aa8.18□□□□□ -1.1
SDCBP-208ENST00000520228 SCAF8Q9UPN6 1271 aaKnown RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 PDS5AQ29RF7 1337 aaKnown RBP8.18□□□□□ -1.1
SDCBP-208ENST00000520228 FAM227AF5H4B4 570 aa8.17□□□□□ -1.1
SDCBP-208ENST00000520228 PRSS23O95084 383 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms