RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	DNMT3B	Q9UBC3	853 aa	Known RBP	5.11	□□□□□ -1.59
MATR3-223	ENST00000514402	CPNE7	Q9UBL6	633 aa		5.11	□□□□□ -1.59
MATR3-223	ENST00000514402	CCNL1	Q9UK58	526 aa	Predicted RBP	5.11	□□□□□ -1.59
MATR3-223	ENST00000514402	ERBB2	P04626	1255 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	CHRM5	P08912	532 aa	Predicted RBP	5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	CYP4F2	P78329	520 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	FMO1	Q01740	532 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	ARHGEF7	Q14155	803 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	PRAMEF17	Q5VTA0	474 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	SLC9A4	Q6AI14	798 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	ZNF782	Q6ZMW2	699 aa	Predicted RBP	5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	SIRT6	Q8N6T7	355 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	FAM156A	Q8NDB6	213 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	C17orf80	Q9BSJ5	609 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	C1QTNF7	Q9BXJ2	289 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	BTBD1	Q9H0C5	482 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	FAM83D	Q9H4H8	585 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	OGDHL	Q9ULD0	1010 aa		5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	G3BP2	Q9UN86	482 aa	Known RBP	5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	SETD1B	Q9UPS6	1966 aa	Known RBP	5.1	□□□□□ -1.59
MATR3-223	ENST00000514402	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	COL3A1	P02461	1466 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	ZNF804B	A4D1E1	1349 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	FRMPD2	Q68DX3	1309 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	DNAJC9-AS1	A6NH13	148 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	AQP7P3	A6NL99	342 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	VSTM5	A8MXK1	200 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	TMEM233	B4DJY2	109 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	POC1B-GALNT4	F8VUJ3	575 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	FOXN3	O00409	490 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	RASSF9	O75901	435 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	TUBB4A	P04350	444 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	PHKG2	P15735	406 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	GK	P32189	559 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	SSBP2	P81877	361 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	TIAL1	Q01085	375 aa	Known RBP eCLIP	5.09	□□□□□ -1.59	6e-6	■■■■□ 21
MATR3-223	ENST00000514402	CYP1B1	Q16678	543 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	KIAA0753	Q2KHM9	967 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	LRCH2	Q5VUJ6	765 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	PPP4R4	Q6NUP7	873 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	KIRREL2	Q6UWL6	708 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	NAPRT	Q6XQN6	538 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	YAF2	Q8IY57	180 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	GALNT4	Q8N4A0	578 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	VGLL2	Q8N8G2	317 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	TERB1	Q8NA31	727 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	LENG8	Q96PV6	779 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	VN1R3	Q9BXE9	311 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	ZNF287	Q9HBT7	754 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	GBA2	Q9HCG7	927 aa	Predicted RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	OBP2A	Q9NY56	170 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	TFCP2L1	Q9NZI6	479 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	DDX20	Q9UHI6	824 aa	Known RBP	5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	AMFR	Q9UKV5	643 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	USP22	Q9UPT9	525 aa		5.09	□□□□□ -1.59
MATR3-223	ENST00000514402	TISP43	B9A030	160 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	UBE2Q2L	H0YL09	131 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	ADAMTS3	O15072	1205 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	CD3EAP	O15446	510 aa	Known RBP	5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	SRGAP2	O75044	1071 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	PMPCB	O75439	489 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	TXN	P10599	105 aa	Known RBP	5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	RHCE	P18577	417 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	LMO1	P25800	156 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	ACVR2A	P27037	513 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	PEX2	P28328	305 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	ABCG1	P45844	678 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	MTHFS	P49914	203 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	E2F1	Q01094	437 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	RHD	Q02161	417 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	SLC29A2	Q14542	456 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	GRM3	Q14832	879 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	LY6K	Q17RY6	165 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	ZNF750	Q32MQ0	723 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	CERKL	Q49MI3	558 aa	Predicted RBP	5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	L1TD1	Q5T7N2	865 aa	Known RBP	5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	MZT2A	Q6P582	158 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	ZDHHC24	Q6UX98	284 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	C1QL2	Q7Z5L3	287 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	NEK8	Q86SG6	692 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	TTC8	Q8TAM2	541 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	CYP2W1	Q8TAV3	490 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	TMEM171	Q8WVE6	324 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	TTC17	Q96AE7	1141 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	ASB2	Q96Q27	587 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	FYTTD1	Q96QD9	318 aa	Known RBP	5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	PRR25	Q96S07	402 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	COL20A1	Q9P218	1284 aa		5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	DRG1	Q9Y295	367 aa	Known RBP	5.08	□□□□□ -1.6
MATR3-223	ENST00000514402	FER1L4	A9Z1Z3	1794 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	PRRT4	C9JH25	899 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	BTBD19	C9JJ37	291 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	RRP9	O43818	475 aa	Known RBP	5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	USP1	O94782	785 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	ZKSCAN1	P17029	563 aa	Predicted RBP	5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	EPHB2	P29323	1055 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	UQCRC1	P31930	480 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	PTDSS1	P48651	473 aa	Known RBP	5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	CPT1A	P50416	773 aa		5.07	□□□□□ -1.6
MATR3-223	ENST00000514402	TIRAP	P58753	221 aa		5.07	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms