RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TDRD10Q5VZ19 366 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TRIM68Q6AZZ1 485 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ANKRD54Q6NXT1 300 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 CRIPAKQ8N1N5 446 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 CASP10Q92851 521 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TIPINQ9BVW5 301 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 MIS12Q9H081 205 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 POLR3BQ9NW08 1133 aaPredicted RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 NCOR2Q9Y618 2525 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ABLIM1O14639 778 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 RHOP08100 348 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 POLR2FP61218 127 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 PLCB3Q01970 1234 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TNK2Q07912 1038 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 PAK1Q13153 545 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM187BQ17R55 369 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TSNAXIP1Q2TAA8 658 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 SPATA1Q5VX52 437 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 ATL3Q6DD88 541 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 TMEM270Q6UE05 265 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 RSRC2Q7L4I2 434 aaKnown RBP8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 OSTM1Q86WC4 334 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 SCAMP5Q8TAC9 235 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 DHRS1Q96LJ7 313 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 SYT15Q9BQS2 421 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 CUEDC2Q9H467 287 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 PLCB1Q9NQ66 1216 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 RMND1Q9NWS8 449 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 KLHL42Q9P2K6 505 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 HPSEQ9Y251 543 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 USH1CQ9Y6N9 552 aa8.33□□□□□ -1.08
LIMCH1-219ENST00000514096 MYO18AQ92614 2054 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 A0A1W2PQ27 194 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 A0A1W2PQ64 194 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 A0A1W2PQD8 194 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 SUPT3HO75486 399 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 BMP6P22004 513 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FSHRP23945 695 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CLCN4P51793 760 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 MYL7Q01449 175 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 IFT88Q13099 833 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 VEPH1Q14D04 833 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 RCN1Q15293 331 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 SV2CQ496J9 727 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 SFMBT2Q5VUG0 894 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 KIAA0319Q5VV43 1072 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 PARM1Q6UWI2 310 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF662Q6ZS27 426 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 YAF2Q8IY57 180 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 EFHBQ8N7U6 833 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 NAT16Q8N8M0 369 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 TDRD5Q8NAT2 981 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FGF13Q92913 245 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM149B1Q96BN6 582 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 RIPOR3Q96MK2 946 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 MYADMQ96S97 322 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM167BQ9BTA0 163 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 NFKBIZQ9BYH8 718 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF518BQ9C0D4 1074 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM207AQ9NSI2 230 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 UTP6Q9NYH9 597 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 KIAA1468Q9P260 1216 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 SIX4Q9UIU6 781 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZMYM2Q9UBW7 1377 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 PVALEFA0A1B0GWK0 134 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 GRAP2O75791 330 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZRANB2O95218 330 aaKnown RBP eCLIP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 DESP17661 470 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 HOXC13P31276 330 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 GPC5P78333 572 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 POU5F1BQ06416 359 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ELAVL2Q12926 359 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 SLC5A9Q2M3M2 681 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CBWD6Q4V339 395 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CBWD3Q5JTY5 395 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CBWD5Q5RIA9 395 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 GPR158Q5T848 1215 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 AOPEPQ8N6M6 819 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FAM81AQ8TBF8 368 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 FGF14Q92915 247 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF560Q96MR9 790 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ASAH2Q9NR71 780 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 LMBRD1Q9NUN5 540 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 COG5Q9UP83 839 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 PCDHB4Q9Y5E5 795 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 H0Y858 1186 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 NRG2O14511 850 aaPredicted RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 TRDMT1O14717 391 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 TBX18O95935 607 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 AVPR1AP37288 418 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 CD151P48509 253 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 NDST1P52848 882 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 NOP14P78316 857 aaKnown RBP8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 DSG1Q02413 1049 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 SOWAHAQ2M3V2 549 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 DNAAF5Q86Y56 855 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ATP11CQ8NB49 1132 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF461Q8TAF7 563 aa8.32□□□□□ -1.08
LIMCH1-219ENST00000514096 ZNF507Q8TCN5 953 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms