RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 POU3F2P20265 443 aaPredicted RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 CST5P28325 142 aaPredicted RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 ADCY7P51828 1080 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 DSG1Q02413 1049 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 PTH1RQ03431 593 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 FOXE3Q13461 319 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 TCTN1Q2MV58 587 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 GAGE13Q4V321 117 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 CREB3L3Q68CJ9 461 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 C19orf48Q6RUI8 117 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 SLC4A10Q6U841 1118 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 GAREM2Q75VX8 874 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 NOL8Q76FK4 1167 aaKnown RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 ATG9AQ7Z3C6 839 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 JAZF1Q86VZ6 243 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 MB21D1Q8N884 522 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 PLA2G15Q8NCC3 412 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 PLEKHG4BQ96PX9 1271 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 TCF25Q9BQ70 676 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 ORAI3Q9BRQ5 295 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 TARS2Q9BW92 718 aaKnown RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 SMC4Q9NTJ3 1288 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 AURKAIP1Q9NWT8 199 aaPredicted RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 USP36Q9P275 1121 aaKnown RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 ANKFY1Q9P2R3 1169 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 BARX2Q9UMQ3 279 aaPredicted RBP4.65□□□□□ -1.67
USP54-217ENST00000498213 ROBO3Q96MS0 1386 aa4.65□□□□□ -1.67
USP54-217ENST00000498213 ANKRD17O75179 2603 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 DSPP15924 2871 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 A0A1B0GUL6 1792 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 UBE2QL1A1L167 161 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 C2orf78A6NCI8 922 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 OPHN1O60890 802 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 BAIAP3O94812 1187 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 FSBPO95073 299 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 JUNP05412 331 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 HLA-DOAP06340 250 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 VSIG10L2P0DP72 767 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 HNRNPLP14866 589 aaKnown RBP eCLIP4.64□□□□□ -1.673e-8■■■■□ 26.7
USP54-217ENST00000498213 VCAM1P19320 739 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 AOC1P19801 751 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 XPAP23025 273 aaPredicted RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 LSP1P33241 339 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 RFC2P35250 354 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 RHBDL3P58872 404 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 SHC2P98077 582 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 LRRC32Q14392 662 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 LRRC24Q50LG9 513 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 Q6ZSN1 163 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 CLEC14AQ86T13 490 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 GSPT2Q8IYD1 628 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 UBALD2Q8IYN6 164 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 MSL3Q8N5Y2 521 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 SMRP1Q8NCR6 262 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 UPF3AQ9H1J1 476 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 ALDH8A1Q9H2A2 487 aaPredicted RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 EPC1Q9H2F5 836 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 MROH8Q9H579 483 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 RPAP3Q9H6T3 665 aaPredicted RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 ZMAT4Q9H898 229 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 AGO3Q9H9G7 860 aaKnown RBP4.64□□□□□ -1.67
USP54-217ENST00000498213 HOXC10Q9NYD6 342 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 SORCS3Q9UPU3 1222 aa4.64□□□□□ -1.67
USP54-217ENST00000498213 ABCA12Q86UK0 2595 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 A0A0A6YYJ9 748 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 NPIPB8E9PQR5 432 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 SLC30A4O14863 429 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 GRM6O15303 877 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 ZNF202O95125 648 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 SP9P0CG40 484 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 BTDP43251 543 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 NPEPPSP55786 919 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 ABHD18Q0P651 414 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 KLF10Q13118 480 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 ACVR2BQ13705 512 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 PCBP1Q15365 356 aaKnown RBP eCLIP4.63□□□□□ -1.67
USP54-217ENST00000498213 ELAVL1Q15717 326 aaKnown RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 LSM12Q3MHD2 195 aaKnown RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 SPECC1Q5M775 1068 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 CCDC158Q5M9N0 1113 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 FAM111BQ6SJ93 734 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.63□□□□□ -1.67
USP54-217ENST00000498213 ZNF662Q6ZS27 426 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 KANSL1Q7Z3B3 1105 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 RBM23Q86U06 439 aaKnown RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 CDYL2Q8N8U2 506 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 SPATA5Q8NB90 893 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 LEO1Q8WVC0 666 aaPredicted RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 MIEF2Q96C03 454 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 NSUN4Q96CB9 384 aaKnown RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 BBC3Q96PG8 261 aaPredicted RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 GPHA2Q96T91 129 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 APOL5Q9BWW9 433 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 PITHD1Q9GZP4 211 aaPredicted RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 SLKQ9H2G2 1235 aaPredicted RBP4.63□□□□□ -1.67
USP54-217ENST00000498213 SH2D4AQ9H788 454 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 PARPBPQ9NWS1 579 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 KCNG1Q9UIX4 513 aa4.63□□□□□ -1.67
USP54-217ENST00000498213 ZBTB21Q9ULJ3 1066 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms