RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 MTMR6Q9Y217 621 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 SPTBN2O15020 2390 aa12.33□□□□□ -0.44
COL6A3-213ENST00000493475 TPRP12270 2363 aaKnown RBP12.32□□□□□ -0.44
COL6A3-213ENST00000493475 C2orf78A6NCI8 922 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 ZNF840PA6NDX5 716 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 OTOL1A6NHN0 477 aaPredicted RBP12.32□□□□□ -0.44
COL6A3-213ENST00000493475 LEFTY2O00292 366 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 TADA3O75528 432 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 KIF20AO95235 890 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 STAU1O95793 577 aaKnown RBP12.32□□□□□ -0.44
COL6A3-213ENST00000493475 CAVIN2O95810 425 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 APODP05090 189 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 YWHAQP27348 245 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 CYP2J2P51589 502 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 WNT7BP56706 349 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 SLC7A9P82251 487 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 GOLGA8FQ08AF8 430 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 GOLGA8DPQ0D2H9 430 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 PLK5Q496M5 336 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 WDR44Q5JSH3 913 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 EOGTQ5NDL2 527 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 STPG1Q5TH74 334 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 ATL3Q6DD88 541 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 CNNM4Q6P4Q7 775 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 NUP93Q8N1F7 819 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 CXorf38Q8TB03 319 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 KBTBD7Q8WVZ9 684 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 CCDC47Q96A33 483 aaKnown RBP12.32□□□□□ -0.44
COL6A3-213ENST00000493475 OTUB2Q96DC9 234 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 MED10Q9BTT4 135 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 GCNT4Q9P109 453 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 BCCIPQ9P287 314 aaKnown RBP eCLIP12.32□□□□□ -0.44
COL6A3-213ENST00000493475 CFAP45Q9UL16 551 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 SH3BP1Q9Y3L3 701 aa12.32□□□□□ -0.44
COL6A3-213ENST00000493475 ANK1P16157 1881 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 PVALEFA0A1B0GWK0 134 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 F8VP50 259 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 KHNYNO15037 678 aaKnown RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 GDF9O60383 454 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 ATP2C2O75185 946 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 MBL2P11226 248 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 PTPN1P18031 435 aaKnown RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 LMO2P25791 158 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 ME1P48163 572 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 CYP24A1Q07973 514 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 IFRD2Q12894 506 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 SF3A2Q15428 464 aaKnown RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 ST3GAL2Q16842 350 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 ZNF699Q32M78 642 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 C2orf27AQ580R0 203 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 ZNF667Q5HYK9 610 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 PKN3Q6P5Z2 889 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 CYP2U1Q7Z449 544 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 LIMS2Q7Z4I7 341 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 FILIP1Q7Z7B0 1213 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 TTC30AQ86WT1 665 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 B3GALNT2Q8NCR0 500 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 ZSWIM2Q8NEG5 633 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 WHAMMQ8TF30 809 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 FBXO32Q969P5 355 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 CNOT6LQ96LI5 555 aaKnown RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 PNKPQ96T60 521 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 C7orf25Q9BPX7 421 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 EDEM2Q9BV94 578 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 IMPG2Q9BZV3 1241 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 CRTAC1Q9NQ79 661 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 C2orf42Q9NWW7 574 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 COMMD8Q9NX08 183 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 TFIP11Q9UBB9 837 aaKnown RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 NXF1Q9UBU9 619 aaKnown RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 CIZ1Q9ULV3 898 aaPredicted RBP12.31□□□□□ -0.44
COL6A3-213ENST00000493475 CPQQ9Y646 472 aa12.31□□□□□ -0.44
COL6A3-213ENST00000493475 A0A087X0B3 334 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 E2F8A0AVK6 867 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 ADH5P11766 374 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 TUBP50607 506 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 SEC13P55735 322 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 GAD2Q05329 585 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 LMAN2Q12907 356 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 TAF10Q12962 218 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 KNOP1Q1ED39 458 aaKnown RBP12.3□□□□□ -0.44
COL6A3-213ENST00000493475 PLA2G2CQ5R387 149 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 ANO7Q6IWH7 933 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 LPCAT2Q7L5N7 544 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 EPM2AIP1Q7L775 607 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-213ENST00000493475 HSCBQ8IWL3 235 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 NELFCDQ8IXH7 590 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 C12orf56Q8IXR9 622 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 CCDC150Q8NCX0 1101 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 KCNV2Q8TDN2 545 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 USP33Q8TEY7 942 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 SMARCD1Q96GM5 515 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 SLC22A12Q96S37 553 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 MRPL45Q9BRJ2 306 aaKnown RBP12.3□□□□□ -0.44
COL6A3-213ENST00000493475 FGFBP2Q9BYJ0 223 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 FBXO44Q9H4M3 255 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 FBRSL1Q9HCM7 1045 aaKnown RBP12.3□□□□□ -0.44
COL6A3-213ENST00000493475 DMAP1Q9NPF5 467 aaPredicted RBP12.3□□□□□ -0.44
COL6A3-213ENST00000493475 EXOC1Q9NV70 894 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 SMPD4Q9NXE4 827 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms