RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 VSX1Q9NZR4 365 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 FOXJ2Q9P0K8 574 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 OGDHLQ9ULD0 1010 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 WNT6Q9Y6F9 365 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 KIF14Q15058 1648 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 DISP1Q96F81 1524 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 FAM135AQ9P2D6 1515 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 MROH2AA6NES4 1674 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ITSN2Q9NZM3 1697 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 FRMPD2Q68DX3 1309 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ADGRA2Q96PE1 1338 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 IQGAP2Q13576 1575 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 NRKQ7Z2Y5 1582 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 XIRP1Q702N8 1843 aaKnown RBP2.65□□□□□ -1.98
HMGB1-208ENST00000490788 DLC1Q96QB1 1528 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 VSTM5A8MXK1 200 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PSMD9O00233 223 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PRPF3O43395 683 aaKnown RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 RASSF9O75901 435 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 MAP4K4O95819 1239 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 IGLV2-14P01704 120 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 FAM163BP0C2L3 166 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 NPR1P16066 1061 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PRKAR1BP31321 381 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 MTHFSP49914 203 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 CCT8P50990 548 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PDE6CP51160 858 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF134P52741 427 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 TPTEP56180 551 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 FAM193AP78312 1265 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 MRPS21P82921 87 aaKnown RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 CTBP1Q13363 440 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 CNN3Q15417 329 aaKnown RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 INSCQ1MX18 579 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 KIAA0895LQ68EN5 471 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 SUMO4Q6EEV6 95 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 SYCE2Q6PIF2 218 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 SLC29A4Q7RTT9 530 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF804AQ7Z570 1209 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 DTX2Q86UW9 622 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 RASAL3Q86YV0 1011 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 FMNL3Q8IVF7 1028 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 SPARTQ8N0X7 666 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 CELF5Q8N6W0 485 aaKnown RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 XAGE5Q8WWM1 108 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 IPCEF1Q8WWN9 437 aaPredicted RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 LRTOMTQ8WZ04 291 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 RAPGEF4Q8WZA2 1011 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 RUNDC1Q96C34 613 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 MRGPRX1Q96LB2 322 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 NT5C1BQ96P26 610 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PPP1R9BQ96SB3 815 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 LRFN3Q9BTN0 628 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 TRIM54Q9BYV2 358 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF518BQ9C0D4 1074 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ZNF287Q9HBT7 754 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 A1CFQ9NQ94 594 aaKnown RBP2.65□□□□□ -1.99
HMGB1-208ENST00000490788 KLHL42Q9P2K6 505 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 HDAC9Q9UKV0 1011 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PADI4Q9UM07 663 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ENTPD2Q9Y5L3 495 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 PLCH2O75038 1416 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 ARHGAP23Q9P227 1491 aa2.65□□□□□ -1.99
HMGB1-208ENST00000490788 TNRQ92752 1358 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 EP400Q96L91 3159 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 CLTCQ00610 1675 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 A0A087WWL8 130 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 ISM1B1AKI9 464 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 hCG_1984214I3L0E3 225 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 MASP2O00187 686 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 GOLIM4O00461 696 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 DCLK1O15075 740 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 RGS10O43665 173 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TOMM70O94826 608 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 RASAL1O95294 804 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 PDHA1P08559 390 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 DLDP09622 509 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 NPSP0C0P6 89 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 EN2P19622 333 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 CYP2C18P33260 490 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 PTH2RP49190 550 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 CLK3P49761 638 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TOB1P50616 345 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 CLCN2P51788 898 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 SUMO3P55854 103 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 EEFSECP57772 596 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 BOP1Q14137 746 aaKnown RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 POLD3Q15054 466 aaPredicted RBP2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TBC1D25Q3MII6 688 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 PLA1AQ53H76 456 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 TREML2Q5T2D2 321 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 DEPDC1Q5TB30 811 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 RNF220Q5VTB9 566 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 CACHD1Q5VU97 1274 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 CEP85Q6P2H3 762 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 GGT6Q6P531 493 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 ANKRD16Q6P6B7 361 aa2.64□□□□□ -1.99
HMGB1-208ENST00000490788 WDR53Q7Z5U6 358 aaPredicted RBP2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms