RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PDGFRBP09619 1106 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 CT47B1P0C2W7 299 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 EN2P19622 333 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 IBSPP21815 317 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 ATP5F1P24539 256 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 GKP32189 559 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 RAB27AP51159 221 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 TRIP6Q15654 476 aaKnown RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 FAM187BQ17R55 369 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 CERKLQ49MI3 558 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 Q4G0T1 1027 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 MEX3CQ5U5Q3 659 aaKnown RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 MIS18BP1Q6P0N0 1132 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 ZDHHC24Q6UX98 284 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 ZNF813Q6ZN06 617 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 EPM2AIP1Q7L775 607 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 OVCH2Q7RTZ1 564 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 SFTPA1Q8IWL2 248 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 OR6B3Q8NGW1 331 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 IL31RAQ8NI17 732 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 RAPGEF4Q8WZA2 1011 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 CTHRC1Q96CG8 243 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 MMS19Q96T76 1030 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 KRTAP1-5Q9BYS1 174 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 CDH19Q9H159 772 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 GBA2Q9HCG7 927 aaPredicted RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 DDX56Q9NY93 547 aaKnown RBP3.85□□□□□ -1.79
CPSF3-205ENST00000489629 KLHL13Q9P2N7 655 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 ZNF180Q9UJW8 692 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 AMFRQ9UKV5 643 aa3.85□□□□□ -1.79
CPSF3-205ENST00000489629 UBE2Q2LH0YL09 131 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 PHGDHO43175 533 aaKnown RBP3.84□□□□□ -1.79
CPSF3-205ENST00000489629 TBC1D4O60343 1298 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 USP1O94782 785 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 A1BGP04217 495 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 IL1R2P27930 398 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 PRKAG1P54619 331 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 BCAT1P54687 386 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 SLC13A2Q13183 592 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 CCNIQ14094 377 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 ANO6Q4KMQ2 910 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 DCAF12L1Q5VU92 463 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 AWAT2Q6E213 333 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 SWSAP1Q6NVH7 229 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 NPNTQ6UXI9 565 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 CNGA4Q8IV77 575 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 SIRT6Q8N6T7 355 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 ZBTB34Q8NCN2 500 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.84□□□□□ -1.79
CPSF3-205ENST00000489629 ADAMTS18Q8TE60 1221 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 PIGOQ8TEQ8 1089 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 COQ8BQ96D53 544 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 TRIM5Q9C035 493 aa3.84□□□□□ -1.79
CPSF3-205ENST00000489629 DNMT3BQ9UBC3 853 aaKnown RBP3.84□□□□□ -1.79
CPSF3-205ENST00000489629 ANKRD62A6NC57 917 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 BTBD19C9JJ37 291 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 M0R3H8 397 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 TBX3O15119 743 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 FOXG1P55316 489 aaPredicted RBP3.83□□□□□ -1.8
CPSF3-205ENST00000489629 RAB32Q13637 225 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 RABEP1Q15276 862 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 CERCAMQ5T4B2 595 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 SERPINA13PQ6UXR4 307 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 MAEAQ7L5Y9 396 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 TECPR1Q7Z6L1 1165 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 MICU3Q86XE3 530 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 LINC01465Q8N7H1 131 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 OR56A3Q8NH54 315 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 PNISRQ8TF01 805 aaKnown RBP3.83□□□□□ -1.8
CPSF3-205ENST00000489629 RUNDC1Q96C34 613 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 LRGUKQ96M69 825 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 FAM118BQ9BPY3 351 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 B3GNT5Q9BYG0 378 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 C22orf23Q9BZE7 217 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 ZNF518BQ9C0D4 1074 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 DRG1Q9Y295 367 aaKnown RBP3.83□□□□□ -1.8
CPSF3-205ENST00000489629 AFG3L2Q9Y4W6 797 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 CDY1Q9Y6F8 540 aa3.83□□□□□ -1.8
CPSF3-205ENST00000489629 USP19O94966 1318 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 TRIM38O00635 465 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 CES2O00748 559 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 MT-CO3P00414 261 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 MYBP10242 640 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 APEHP13798 732 aaKnown RBP3.82□□□□□ -1.8
CPSF3-205ENST00000489629 TIAL1Q01085 375 aaKnown RBP eCLIP3.82□□□□□ -1.8
CPSF3-205ENST00000489629 LMAN2Q12907 356 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 MLC1Q15049 377 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 PXDC1Q5TGL8 231 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 PTCHD4Q6ZW05 846 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 KIAA0319LQ8IZA0 1049 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 SPARTQ8N0X7 666 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 MPP5Q8N3R9 675 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 PRSS3P2Q8NHM4 247 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 C16orf52Q8NHV5 167 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 DNAJB14Q8TBM8 379 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 HMCESQ96FZ2 354 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 CCDC17Q96LX7 622 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 FYTTD1Q96QD9 318 aaKnown RBP3.82□□□□□ -1.8
CPSF3-205ENST00000489629 EFHD1Q9BUP0 239 aa3.82□□□□□ -1.8
CPSF3-205ENST00000489629 TMEM60Q9H2L4 133 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms