RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 CYP3A7-CYP3A51PA0A087WV96 503 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 F8W810 466 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 LINC01387J3KSC0 135 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 EDIL3O43854 480 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 TSPAN1O60635 241 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 PRPF40AO75400 957 aaKnown RBP7.36□□□□□ -1.23
HDAC3-209ENST00000486618 MSL3P1P0C860 447 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 ATF4P18848 351 aaPredicted RBP7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CYP3A7P24462 503 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CNR2P34972 360 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 HALP42357 657 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CCR3P51677 355 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 PTENP60484 403 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CCT2P78371 535 aaKnown RBP7.36□□□□□ -1.23
HDAC3-209ENST00000486618 EMC2Q15006 297 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 PSMD5Q16401 504 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CSRP2Q16527 193 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 LPAL2Q16609 132 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 C8orf34Q49A92 452 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 RTP2Q5QGT7 225 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 FAM171A1Q5VUB5 890 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 IL31Q6EBC2 164 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 ZCCHC8Q6NZY4 707 aaKnown RBP7.36□□□□□ -1.23
HDAC3-209ENST00000486618 TXNDC11Q6PKC3 985 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CEP57Q86XR8 500 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 JAMLQ86YT9 394 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 NKAIN3Q8N8D7 197 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 C1orf127Q8N9H9 656 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 ITFG1Q8TB96 612 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 TRMT2BQ96GJ1 504 aaKnown RBP7.36□□□□□ -1.23
HDAC3-209ENST00000486618 AGAP3Q96P47 875 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CLSTN3Q9BQT9 956 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 FAM167BQ9BTA0 163 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 CHRDQ9H2X0 955 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 BRD9Q9H8M2 597 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 HEBP1Q9NRV9 189 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 SEMA4GQ9NTN9 838 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 SPAG17Q6Q759 2223 aa7.36□□□□□ -1.23
HDAC3-209ENST00000486618 FAM25EA8MYX2 175 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 F8W735 103 aaPredicted RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 CCP110O43303 1012 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 KIAA0754O94854 1291 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 ALX3O95076 343 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 TDP2O95551 362 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 TPM3P06753 285 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 PTPN2P17706 415 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 AKAP5P24588 427 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 YWHABP31946 246 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 CXCL12P48061 93 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 DAB2P98082 770 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 PPP2R5CQ13362 524 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 TUSC3Q13454 348 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 FZD5Q13467 585 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 RAB33AQ14088 237 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 XKR9Q5GH70 373 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 SLC27A1Q6PCB7 646 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 C16orf54Q6UWD8 224 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 PRR23CQ6ZRP0 262 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 C4orf19Q8IY42 314 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 TMEM130Q8N3G9 435 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 GALNT11Q8NCW6 608 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 GSTCDQ8NEC7 633 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 LNX1Q8TBB1 728 aaPredicted RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 SLC7A14Q8TBB6 771 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 ETNPPLQ8TBG4 499 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 TAF4BQ92750 862 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 ERCC4Q92889 916 aaPredicted RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 ELSPBP1Q96BH3 223 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 MCRS1Q96EZ8 462 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 CPB2Q96IY4 423 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 FAM20AQ96MK3 541 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 DUSP9Q99956 384 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 TRMT61BQ9BVS5 477 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 SLC26A6Q9BXS9 759 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 NXF3Q9H4D5 531 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 AKTIPQ9H8T0 292 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 LMAN1LQ9HAT1 526 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 VPS54Q9P1Q0 977 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 DNMT3BQ9UBC3 853 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 DDX25Q9UHL0 483 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 SALL4Q9UJQ4 1053 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 NDRG2Q9UN36 371 aaKnown RBP7.35□□□□□ -1.23
HDAC3-209ENST00000486618 PCDHA4Q9UN74 947 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 SNX5Q9Y5X3 404 aa7.35□□□□□ -1.23
HDAC3-209ENST00000486618 A0A1B0GUA9 196 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 KLHL33A6NCF5 533 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 ZNF197O14709 1029 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 SNX2O60749 519 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 NPTXRO95502 500 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 LRG1P02750 347 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 THP07101 528 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 RHOP08100 348 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 TDGF1P13385 188 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 ACPPP15309 386 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 IFNAR1P17181 557 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 ARF4P18085 180 aaPredicted RBP7.34□□□□□ -1.23
HDAC3-209ENST00000486618 CES1P23141 567 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 PMLP29590 882 aa7.34□□□□□ -1.23
HDAC3-209ENST00000486618 ELF1P32519 619 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms