RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PPP2R5AQ15172 486 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 C3orf38Q5JPI3 329 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 ZNF425Q6IV72 752 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 SLC2A7Q6PXP3 512 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 TRIM72Q6ZMU5 477 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 NEK8Q86SG6 692 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 MAGEB6Q8N7X4 407 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 WASF1Q92558 559 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 C5orf34Q96MH7 638 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 CIPCQ9C0C6 399 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 SACM1LQ9NTJ5 587 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 ASIC5Q9NY37 505 aa4.02□□□□□ -1.77
VPS50-216ENST00000484954 DNMT3BQ9UBC3 853 aaKnown RBP4.02□□□□□ -1.77
VPS50-216ENST00000484954 TCRBV5S1A1TA0A578 114 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 TRIM43BA6NCK2 446 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 FAM227AF5H4B4 570 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 H7C4K7 107 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 PPP6CO00743 305 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 SRGAP2O75044 1071 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 S100BP04271 92 aaPredicted RBP4.01□□□□□ -1.77
VPS50-216ENST00000484954 XRCC6P12956 609 aaKnown RBP eCLIP4.01□□□□□ -1.77
VPS50-216ENST00000484954 ARHGAP25P42331 645 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 RENBPP51606 427 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 MLC1Q15049 377 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 ETFDHQ16134 617 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 ARHGAP29Q52LW3 1261 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 LCE1EQ5T753 118 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 KIAA1614Q5VZ46 1190 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 SLC18B1Q6NT16 456 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 TCEAL8Q8IYN2 117 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 TERB1Q8NA31 727 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 ABHD11Q8NFV4 315 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 JDP2Q8WYK2 163 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 TRIM43Q96BQ3 446 aaPredicted RBP4.01□□□□□ -1.77
VPS50-216ENST00000484954 ZBTB45Q96K62 511 aaPredicted RBP4.01□□□□□ -1.77
VPS50-216ENST00000484954 DPCDQ9BVM2 203 aaPredicted RBP4.01□□□□□ -1.77
VPS50-216ENST00000484954 ZNF518BQ9C0D4 1074 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 BHMT2Q9H2M3 363 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 G3BP2Q9UN86 482 aaKnown RBP4.01□□□□□ -1.77
VPS50-216ENST00000484954 CDY1Q9Y6F8 540 aa4.01□□□□□ -1.77
VPS50-216ENST00000484954 ZNF804BA4D1E1 1349 aa4□□□□□ -1.77
VPS50-216ENST00000484954 SMIM35A0A1B0GVV1 85 aa4□□□□□ -1.77
VPS50-216ENST00000484954 PYCARD-AS1I3L0S3 204 aa4□□□□□ -1.77
VPS50-216ENST00000484954 AGPSO00116 658 aa4□□□□□ -1.77
VPS50-216ENST00000484954 TSPAN6O43657 245 aa4□□□□□ -1.77
VPS50-216ENST00000484954 HGFP14210 728 aa4□□□□□ -1.77
VPS50-216ENST00000484954 IL1R1P14778 569 aa4□□□□□ -1.77
VPS50-216ENST00000484954 BRAFP15056 766 aa4□□□□□ -1.77
VPS50-216ENST00000484954 ITGA8P53708 1063 aa4□□□□□ -1.77
VPS50-216ENST00000484954 BCAT1P54687 386 aa4□□□□□ -1.77
VPS50-216ENST00000484954 RPS16P62249 146 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 SATB1Q01826 763 aa4□□□□□ -1.77
VPS50-216ENST00000484954 GALEQ14376 348 aa4□□□□□ -1.77
VPS50-216ENST00000484954 GRM3Q14832 879 aa4□□□□□ -1.77
VPS50-216ENST00000484954 MINDY4Q4G0A6 757 aa4□□□□□ -1.77
VPS50-216ENST00000484954 AWAT1Q58HT5 328 aa4□□□□□ -1.77
VPS50-216ENST00000484954 CERCAMQ5T4B2 595 aa4□□□□□ -1.77
VPS50-216ENST00000484954 NXNQ6DKJ4 435 aa4□□□□□ -1.77
VPS50-216ENST00000484954 CATSPERGQ6ZRH7 1159 aa4□□□□□ -1.77
VPS50-216ENST00000484954 BCDIN3DQ7Z5W3 292 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 C8orf58Q8NAV2 365 aa4□□□□□ -1.77
VPS50-216ENST00000484954 FAM156AQ8NDB6 213 aa4□□□□□ -1.77
VPS50-216ENST00000484954 TSR2Q969E8 191 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 SPSB4Q96A44 273 aa4□□□□□ -1.77
VPS50-216ENST00000484954 DAZAP1Q96EP5 407 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 ASB2Q96Q27 587 aa4□□□□□ -1.77
VPS50-216ENST00000484954 MMS19Q96T76 1030 aa4□□□□□ -1.77
VPS50-216ENST00000484954 STK31Q9BXU1 1019 aa4□□□□□ -1.77
VPS50-216ENST00000484954 AS3MTQ9HBK9 375 aa4□□□□□ -1.77
VPS50-216ENST00000484954 A1CFQ9NQ94 594 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 XPNPEP3Q9NQH7 507 aa4□□□□□ -1.77
VPS50-216ENST00000484954 C1orf112Q9NSG2 853 aa4□□□□□ -1.77
VPS50-216ENST00000484954 TRMT13Q9NUP7 481 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 COL20A1Q9P218 1284 aa4□□□□□ -1.77
VPS50-216ENST00000484954 DRG1Q9Y295 367 aaKnown RBP4□□□□□ -1.77
VPS50-216ENST00000484954 BTBD3Q9Y2F9 522 aa4□□□□□ -1.77
VPS50-216ENST00000484954 VSTM5A8MXK1 200 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 H7C1Q1 480 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 RRP9O43818 475 aaKnown RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 RASAL1O95294 804 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 FGAP02671 866 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 CYP2A6P11509 494 aaPredicted RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 HOXB6P17509 224 aaKnown RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 UQCRC1P31930 480 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 PTDSS1P48651 473 aaKnown RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 FMO1Q01740 532 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 NPY5RQ15761 445 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 CNGA2Q16280 664 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 CACHD1Q5VU97 1274 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 C11orf87Q6NUJ2 197 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 SESTD1Q86VW0 696 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 SPARTQ8N0X7 666 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 Q8N9P0 234 aaPredicted RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 CTHRC1Q96CG8 243 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 WDYHV1Q96HA8 205 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 ZC3H10Q96K80 434 aaKnown RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 SNX18Q96RF0 628 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 KRTAP2-2Q9BYT5 123 aa3.99□□□□□ -1.77
VPS50-216ENST00000484954 SPRTNQ9H040 489 aaPredicted RBP3.99□□□□□ -1.77
VPS50-216ENST00000484954 KLHL13Q9P2N7 655 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms