RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 BMT2Q1RMZ1 405 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 FKBP15Q5T1M5 1219 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 NT5DC1Q5TFE4 455 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 OGFOD2Q6N063 350 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 DOK3Q7L591 496 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 PDSS2Q86YH6 399 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.28□□□□□ -1.4
UPF3A-205ENST00000479712 LGI4Q8N135 537 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 ANKRD42Q8N9B4 389 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 GIMAP8Q8ND71 665 aaPredicted RBP6.28□□□□□ -1.4
UPF3A-205ENST00000479712 IP6K1Q92551 441 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 MAML1Q92585 1016 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 LRRC37BQ96QE4 947 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 LMF1Q96S06 567 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 HERPUD2Q9BSE4 406 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 NELFAQ9H3P2 528 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 SEC61A2Q9H9S3 476 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 SMURF2Q9HAU4 748 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 FBXO34Q9NWN3 711 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 SLC45A2Q9UMX9 530 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 PAXBP1Q9Y5B6 917 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 NPC1L1Q9UHC9 1359 aa6.28□□□□□ -1.4
UPF3A-205ENST00000479712 MAP3K19Q56UN5 1328 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 ZNF831Q5JPB2 1677 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 A0A1W2PPC4 97 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 MED19A0JLT2 244 aaPredicted RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 CDHR4A6H8M9 788 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 ZNF785A8K8V0 405 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 NPHP1O15259 732 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 HARSP12081 509 aaKnown RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 HALP42357 657 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 SP3Q02447 781 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 CXCL9Q07325 125 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 CRHR2Q13324 411 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 RAB32Q13637 225 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 UBXN2BQ14CS0 331 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 TBC1D10BQ4KMP7 808 aaPredicted RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 HSP90AB4PQ58FF6 505 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 ATXN7L2Q5T6C5 722 aaPredicted RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 LMBRD2Q68DH5 695 aaPredicted RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 FAM83AQ86UY5 434 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 ZFP28Q8NHY6 868 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 TFAP2CQ92754 450 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 DCPSQ96C86 337 aaKnown RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 TMEM176AQ96HP8 235 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 LSM14BQ9BX40 385 aaKnown RBP6.27□□□□□ -1.41
UPF3A-205ENST00000479712 ZNF518BQ9C0D4 1074 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 GSTO2Q9H4Y5 243 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 SERHLQ9NQF3 203 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 CEP83Q9Y592 693 aa6.27□□□□□ -1.41
UPF3A-205ENST00000479712 ASTN2O75129 1339 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 PRR5-ARHGAP8B1AHC4 643 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 UNC5CO95185 931 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 ANXA1P04083 346 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 THP07101 528 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 GNAT2P19087 354 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 TECP42680 631 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 ZNF135P52742 658 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 PPP2CBP62714 309 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 PPP2CAP67775 309 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 HTRA4P83105 476 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 CTBP1Q13363 440 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 RAPGEF1Q13905 1077 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 PDCD2Q16342 344 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 ARL13BQ3SXY8 428 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 UTP14CQ5TAP6 766 aaKnown RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 TBC1D9BQ66K14 1250 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 MFSD5Q6N075 450 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 APBB1IPQ7Z5R6 666 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 MICU3Q86XE3 530 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 MPP5Q8N3R9 675 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 ATP11CQ8NB49 1132 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 RNF169Q8NCN4 708 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 OR10H5Q8NGA6 315 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 IQCDQ96DY2 449 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 SNX22Q96L94 193 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 CPPED1Q9BRF8 314 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 PLA2G12BQ9BX93 195 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 GPR35Q9HC97 309 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 FAM30AQ9NZY2 134 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 NARFQ9UHQ1 456 aa6.26□□□□□ -1.41
UPF3A-205ENST00000479712 CNOT7Q9UIV1 285 aaKnown RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 SCAF8Q9UPN6 1271 aaKnown RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 MORC2Q9Y6X9 1032 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 ZNF646O15015 1829 aaPredicted RBP6.26□□□□□ -1.41
UPF3A-205ENST00000479712 CGNL1Q0VF96 1302 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 CFAP47Q6ZTR5 3102 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 A0A087WV62 115 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 CCDC189A1A4V9 331 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 ADAMTS3O15072 1205 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 PIP5K1CO60331 668 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 DNAJB5O75953 348 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 AGFG2O95081 481 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 ANXA2P07355 339 aaKnown RBP6.25□□□□□ -1.41
UPF3A-205ENST00000479712 GRPP07492 148 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 CCL5P13501 91 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 TYRP1P17643 537 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 FGFR2P21802 821 aa6.25□□□□□ -1.41
UPF3A-205ENST00000479712 RPS19P39019 145 aaKnown RBP6.25□□□□□ -1.41
UPF3A-205ENST00000479712 HSPA7P48741 367 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms