RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SLC7A9P82251 487 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 AMPD2Q01433 879 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 TAF10Q12962 218 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 SIM2Q14190 667 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 PUM1Q14671 1186 aaKnown RBP eCLIP19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 RSPO4Q2I0M5 234 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 ZNF667Q5HYK9 610 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 PAQR9Q6ZVX9 377 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 FAM35AQ86V20 835 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 LINC00597Q9H2U6 94 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 POLR3BQ9NW08 1133 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 MYOFQ9NZM1 2061 aa19.99■□□□□ 0.79
CCDC88B-206ENST00000473405 SDK1Q7Z5N4 2213 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 LEFTY2O00292 366 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 RHOBTB3O94955 611 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 DRD1P21728 446 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 PPP3CCP48454 512 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 GAB4Q2WGN9 574 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 TMC2Q8TDI7 906 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 KCNK16Q96T55 309 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 GOLPH3LQ9H4A5 285 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 HMGXB4Q9UGU5 601 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 USP18Q9UMW8 372 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 TRAF3IP3Q9Y228 551 aa19.98■□□□□ 0.79
CCDC88B-206ENST00000473405 CHD8Q9HCK8 2581 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 TNFRSF10BO14763 440 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 RETP07949 1114 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 PXNP49023 591 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 LMNB2Q03252 620 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 SPEM2Q0P670 501 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 DPYDQ12882 1025 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 IFRD2Q12894 506 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 SV2AQ7L0J3 742 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 DGLUCYQ7Z3D6 616 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 FUKQ8N0W3 1084 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 CD101Q93033 1021 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 SLITRK1Q96PX8 696 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 CPQQ9Y646 472 aa19.97■□□□□ 0.79
CCDC88B-206ENST00000473405 A0A1W2PQ27 194 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 A0A1W2PQ64 194 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 A0A1W2PQD8 194 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 ATG13O75143 517 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 CLSTN1O94985 981 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 NFATC1O95644 943 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 ASS1P00966 412 aaKnown RBP19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 ASPAP45381 313 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 ORC1Q13415 861 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 FBXO43Q4G163 708 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 CEP135Q66GS9 1140 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 FILIP1Q7Z7B0 1213 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 NUP93Q8N1F7 819 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 RPLP0P6Q8NHW5 317 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 SCAMP5Q8TAC9 235 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 TNIP3Q96KP6 325 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 SMPD4Q9NXE4 827 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 ATP8B3O60423 1300 aa19.96■□□□□ 0.79
CCDC88B-206ENST00000473405 EPG5Q9HCE0 2579 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 MED19A0JLT2 244 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SCAMP3O14828 347 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 IKBKBO14920 756 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 CALUO43852 315 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 LRP3O75074 770 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 RTN3O95197 1032 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 ABL1P00519 1130 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 CYP17A1P05093 508 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 YWHAQP27348 245 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 OPRD1P41143 372 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SLC5A3P53794 718 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 NFIL3Q16649 462 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SGSM1Q2NKQ1 1148 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SPOPLQ6IQ16 392 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 KRBA2Q6ZNG9 492 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 ACOT1Q86TX2 421 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 FAM160A2Q8N612 972 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 KIAA1958Q8N8K9 716 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 ZMIZ2Q8NF64 920 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 OVCA2Q8WZ82 227 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 TAF4BQ92750 862 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 FBXO32Q969P5 355 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SMARCD1Q96GM5 515 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 ZFRQ96KR1 1074 aaKnown RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SCAND2PQ9GZW5 306 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 DMAP1Q9NPF5 467 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 KRT82Q9NSB4 513 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 IL37Q9NZH6 218 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 SLC8A2Q9UPR5 921 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 MAPK8IP1Q9UQF2 711 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 FRMD4BQ9Y2L6 1034 aa19.95■□□□□ 0.78
CCDC88B-206ENST00000473405 CEP295Q9C0D2 2601 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 CCDC163A0A0D9SF12 145 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 FAM92AA1XBS5 289 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 PRR5-ARHGAP8B1AHC4 643 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 MAPK13O15264 365 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 AKAP3O75969 853 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 HLA-DRAP01903 254 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 TRIM49P0CI25 452 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 TRIM49CP0CI26 452 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 CCDC130P13994 396 aa19.94■□□□□ 0.78
CCDC88B-206ENST00000473405 NR2F2P24468 414 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms