RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 PID1Q7Z2X4 250 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 ACOT1Q86TX2 421 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 FAM131BQ86XD5 332 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 WDR75Q8IWA0 830 aaKnown RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 AGGF1Q8N302 714 aaeCLIP11.15□□□□□ -0.62
CHD3-208ENST00000470531 SNRNP27Q8WVK2 155 aaKnown RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 PSPC1Q8WXF1 523 aaKnown RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 USP13Q92995 863 aaPredicted RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 TMA16Q96EY4 203 aaKnown RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 FERMT1Q9BQL6 677 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 TRPC5Q9UL62 973 aaPredicted RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 ALS2Q96Q42 1657 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 MROH7Q68CQ1 1323 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 DNALI1O14645 258 aaPredicted RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 ZNF862O60290 1169 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 ICAM1P05362 532 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 GM2AP17900 193 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 MX2P20592 715 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 RFX1P22670 979 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 FNBP1LQ5T0N5 605 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 MOCOSQ96EN8 888 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 OTUD5Q96G74 571 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 TTC25Q96NG3 672 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 GPR88Q9GZN0 384 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 MAF1Q9H063 256 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 IL1RL2Q9HB29 575 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 RHBDL2Q9NX52 303 aa11.15□□□□□ -0.62
CHD3-208ENST00000470531 NOCTQ9UK39 431 aaKnown RBP11.15□□□□□ -0.62
CHD3-208ENST00000470531 NCANO14594 1321 aa11.15□□□□□ -0.63
CHD3-208ENST00000470531 KCNK1O00180 336 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 B4GALT5O43286 388 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 EXTL3O43909 919 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 SDC4P31431 198 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 NME5P56597 212 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 PRAMEP78395 509 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 STX3Q13277 289 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 BLMHQ13867 455 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 VPS72Q15906 364 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 KLHL38Q2WGJ6 581 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 OLFML2BQ68BL8 750 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 CEP128Q6ZU80 1094 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 LCA5Q86VQ0 697 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 TEX9Q8N6V9 391 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ASAP3Q8TDY4 903 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 FAM151AQ8WW52 585 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 E2F7Q96AV8 911 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 KLC2Q9H0B6 622 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 DEFB129Q9H1M3 183 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 RANBP17Q9H2T7 1088 aaKnown RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 MMADHCQ9H3L0 296 aaPredicted RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 ARHGEF3Q9NR81 526 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 STK32BQ9NY57 414 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ADA2Q9NZK5 511 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 KLHL8Q9P2G9 620 aaPredicted RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 SMG5Q9UPR3 1016 aaKnown RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 A0A1B0GVG6 124 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 UGT1A9O60656 530 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 PGGT1BP53609 377 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ANO4Q32M45 955 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 CIAPIN1Q6FI81 312 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ANO7Q6IWH7 933 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 RWDD4Q6NW29 188 aaKnown RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 ARHGAP22Q7Z5H3 698 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 CCNJLQ8IV13 435 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ANKLE1Q8NAG6 615 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 SYT15Q9BQS2 421 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ASCC2Q9H1I8 757 aaPredicted RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 RNPEPL1Q9HAU8 725 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 UGT1A7Q9HAW7 530 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 UGT1A10Q9HAW8 530 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 UGT1A8Q9HAW9 530 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ADGRA3Q8IWK6 1321 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 FSCN2O14926 492 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ADCY3O60266 1144 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 PGM3O95394 542 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 EGFRP00533 1210 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 VTNP04004 478 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 TPH1P17752 444 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 CALB2P22676 271 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 ANXA13P27216 316 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 RPL22P35268 128 aaKnown RBP11.14□□□□□ -0.63
CHD3-208ENST00000470531 ARHGAP27Q6ZUM4 889 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 UNC5BQ8IZJ1 945 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 SPATA6LQ8N4H0 392 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 STK32AQ8WU08 396 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 VTI1AQ96AJ9 217 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 KIF12Q96FN5 646 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 PHACTR1Q9C0D0 580 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 NMUR2Q9GZQ4 415 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 LRRC19Q9H756 370 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 HES2Q9Y543 173 aa11.14□□□□□ -0.63
CHD3-208ENST00000470531 STAMBPO95630 424 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 KRT7P08729 469 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 RBL1P28749 1068 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 RABGGTBP53611 331 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 MOXD1Q6UVY6 613 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 TRABD2AQ86V40 505 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 PPIL6Q8IXY8 311 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 TNS4Q8IZW8 715 aa11.13□□□□□ -0.63
CHD3-208ENST00000470531 PIAS4Q8N2W9 510 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms