RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ABHD2P08910 425 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 C9orf131Q5VYM1 1079 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 PNMA8AQ86V59 439 aaPredicted RBP19.98■□□□□ 0.79
VIM-203ENST00000469543 LINC01465Q8N7H1 131 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 NETO2Q8NC67 525 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 FNIP1Q8TF40 1166 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 CLEC4CQ8WTT0 213 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 MAGEB18Q96M61 343 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 TRIM56Q9BRZ2 755 aaKnown RBP19.98■□□□□ 0.79
VIM-203ENST00000469543 APOL6Q9BWW8 343 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 EIF2AQ9BY44 585 aaKnown RBP19.98■□□□□ 0.79
VIM-203ENST00000469543 BARX2Q9UMQ3 279 aaPredicted RBP19.98■□□□□ 0.79
VIM-203ENST00000469543 SHOC2Q9UQ13 582 aa19.98■□□□□ 0.79
VIM-203ENST00000469543 SBF1O95248 1867 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 IL4RP24394 825 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 LAMC2Q13753 1193 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 DPYSL3Q14195 570 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 DARS2Q6PI48 645 aaKnown RBP19.97■□□□□ 0.79
VIM-203ENST00000469543 TTC30AQ86WT1 665 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 PPIL6Q8IXY8 311 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 C7orf31Q8N865 590 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 TUBGCP4Q9UGJ1 667 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 A0A1B0GUA9 196 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 C2CD4BA6NLJ0 364 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 ZNF143P52747 638 aaPredicted RBP19.97■□□□□ 0.79
VIM-203ENST00000469543 XRCC4Q13426 336 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 CCDC14Q49A88 953 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 ZNF484Q5JVG2 852 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 FASTKD5Q7L8L6 764 aaKnown RBP19.97■□□□□ 0.79
VIM-203ENST00000469543 AGGF1Q8N302 714 aaeCLIP19.97■□□□□ 0.79
VIM-203ENST00000469543 DENND1AQ8TEH3 1009 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 DPEP3Q9H4B8 488 aa19.97■□□□□ 0.79
VIM-203ENST00000469543 VDRP11473 427 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 YBX3P16989 372 aaKnown RBP eCLIP19.96■□□□□ 0.794e-8■■□□□ 12
VIM-203ENST00000469543 AKAP5P24588 427 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 GABRB2P47870 512 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 TAZQ16635 292 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 PPP6R3Q5H9R7 873 aaPredicted RBP19.96■□□□□ 0.79
VIM-203ENST00000469543 PRAMEF19Q5SWL8 479 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 ECHDC2Q86YB7 292 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 ASB7Q9H672 318 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 ASB14A6NK59 587 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 APOC4-APOC2K7ER74 178 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 SUN1O94901 812 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 NPTXRO95502 500 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 APOC2P02655 101 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 HMGCRP04035 888 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 PDGFRBP09619 1106 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 SMPD1P17405 629 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 GOLGA7BQ2TAP0 167 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 ZNF792Q3KQV3 632 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 ZNF618Q5T7W0 954 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 PARP9Q8IXQ6 854 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 GPRC5AQ8NFJ5 357 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 LENG1Q96BZ8 264 aaPredicted RBP19.96■□□□□ 0.79
VIM-203ENST00000469543 SGSM3Q96HU1 749 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 SMC6Q96SB8 1091 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 NFKBIZQ9BYH8 718 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.96■□□□□ 0.79
VIM-203ENST00000469543 PRKAG3Q9UGI9 489 aa19.96■□□□□ 0.79
VIM-203ENST00000469543 GHRP10912 638 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 GPD1P21695 349 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 HOXA11P31270 313 aaPredicted RBP19.95■□□□□ 0.78
VIM-203ENST00000469543 ELF3P78545 371 aaPredicted RBP19.95■□□□□ 0.78
VIM-203ENST00000469543 PALM2Q8IXS6 379 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 KHSRPQ92945 711 aaKnown RBP eCLIP19.95■□□□□ 0.78
VIM-203ENST00000469543 NT5C1AQ9BXI3 368 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 KLK14Q9P0G3 267 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 F5H423 210 aaPredicted RBP19.95■□□□□ 0.78
VIM-203ENST00000469543 PDHXO00330 501 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 ELK3P41970 407 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 GRIK4Q16099 956 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 FAM187BQ17R55 369 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 SUGP1Q8IWZ8 645 aaKnown RBP19.95■□□□□ 0.78
VIM-203ENST00000469543 PPTC7Q8NI37 304 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 P3H4Q92791 437 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 TTC25Q96NG3 672 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 PAFAH2Q99487 392 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 ASNSD1Q9NWL6 643 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 WDR35Q9P2L0 1181 aa19.95■□□□□ 0.78
VIM-203ENST00000469543 MCF2LO15068 1137 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 FAM155BO75949 473 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 ADRA1DP25100 572 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 EPHX2P34913 555 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 GEMIN4P57678 1058 aaKnown RBP19.94■□□□□ 0.78
VIM-203ENST00000469543 RBP5P82980 135 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 IL9RQ01113 521 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 NDRG1Q92597 394 aaKnown RBP19.94■□□□□ 0.78
VIM-203ENST00000469543 SLC10A4Q96EP9 437 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 ECT2Q9H8V3 914 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 PHTF1Q9UMS5 762 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 H7C0C1 242 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 TYROBPO43914 113 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 DNAJC8O75937 253 aaPredicted RBP19.94■□□□□ 0.78
VIM-203ENST00000469543 ATP5OP48047 213 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 ARL4CP56559 192 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 NCALDP61601 193 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 MTFR1Q15390 333 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 LVRNQ6Q4G3 990 aa19.94■□□□□ 0.78
VIM-203ENST00000469543 FOXP3Q9BZS1 431 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms