RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 PPP2R2CQ9Y2T4 447 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PCDHGC5Q9Y5F6 944 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CDY1Q9Y6F8 540 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 USP3Q9Y6I4 520 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 TRIP11Q15643 1979 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 LTBP2Q14767 1821 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 FAM170AA1A519 330 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 MTMR11A4FU01 709 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SIGLEC16A6NMB1 481 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 USP27XA6NNY8 438 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 BTNL10A8MVZ5 291 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 RNF223E7ERA6 249 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 XPO1O14980 1071 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 PAPSS1O43252 624 aaPredicted RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 TGM5O43548 720 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 CLASP2O75122 1294 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 AP1G2O75843 785 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 LSM8O95777 96 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 ERBB2P04626 1255 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 FYNP06241 537 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SPATA31D3P0C874 917 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SETSIPP0DME0 302 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 NPR3P17342 541 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 DNAJB2P25686 324 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PLA2G4AP47712 749 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PGFP49763 221 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 VAV2P52735 878 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 ROR1Q01973 937 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 ADCY1Q08828 1119 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 BST2Q10589 180 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 MAMLD1Q13495 774 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 KCNC3Q14003 757 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 TAF5Q15542 800 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 GOLGA7BQ2TAP0 167 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PTPN20Q4JDL3 420 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PLEKHA7Q6IQ23 1121 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 ZNF280DQ6N043 979 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 LLGL2Q6P1M3 1020 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 VSTM1Q6UX27 236 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 C4orf50Q6ZRC1 276 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SPATA31D4Q6ZUB0 917 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 MON1BQ7L1V2 547 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 FAM35AQ86V20 835 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 VPS36Q86VN1 386 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 XYLT1Q86Y38 959 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SPATA2LQ8IUW3 424 aaPredicted RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 TCEAL8Q8IYN2 117 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 CCAR2Q8N163 923 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 C17orf53Q8N3J3 647 aaPredicted RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 TTC9BQ8N6N2 239 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SCAMP5Q8TAC9 235 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SLC35G2Q8TBE7 412 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 SPPL2BQ8TCT7 592 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 C2orf15Q8WU43 125 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 ARNTL2Q8WYA1 636 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 NDRG1Q92597 394 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 MYLPFQ96A32 169 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 ARHGEF26Q96DR7 871 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 FUBP3Q96I24 572 aaKnown RBP eCLIP6.28□□□□□ -1.4
USP39-213ENST00000467885 SPATA17Q96L03 361 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PGLYRP2Q96PD5 576 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 TCF25Q9BQ70 676 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 MED10Q9BTT4 135 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 C11orf84Q9BUA3 381 aaPredicted RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 DNAI2Q9GZS0 605 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 THAP2Q9H0W7 228 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PDCL3Q9H2J4 239 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 DEF6Q9H4E7 631 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 ABCB6Q9NP58 842 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 NGRNQ9NPE2 291 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 CYLDQ9NQC7 956 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 TLR9Q9NR96 1032 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 TRMT1Q9NXH9 659 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 ADAM22Q9P0K1 906 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 HESX1Q9UBX0 185 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 TRIM10Q9UDY6 481 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 CHORDC1Q9UHD1 332 aaPredicted RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 TMEM59LQ9UK28 342 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 COG5Q9UP83 839 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PAXBP1Q9Y5B6 917 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 PCDHB5Q9Y5E4 795 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 CHD9Q3L8U1 2897 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 TANC1Q9C0D5 1861 aa6.28□□□□□ -1.4
USP39-213ENST00000467885 LAMA2P24043 3122 aaKnown RBP6.28□□□□□ -1.4
USP39-213ENST00000467885 MICAL3Q7RTP6 2002 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 A0A1W2PPC1 479 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 FAM92AA1XBS5 289 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 TMEM191CA6NGB0 347 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 E5RJQ4 531 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 F8VP50 259 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 M0QYV0 167 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 PIK3R2O00459 728 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 PER2O15055 1255 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 SOAT2O75908 522 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 MTA2O94776 668 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 PAPLNO95428 1278 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 URODP06132 367 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 CCDC175P0C221 793 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 TMEM253P0C7T8 217 aa6.27□□□□□ -1.41
USP39-213ENST00000467885 FAM200BP0CF97 657 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms