RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PCK1P35558 622 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GEMIN4P57678 1058 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MGAT5Q09328 741 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 TMEM62Q0P6H9 643 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MKRN3Q13064 507 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 DNAJC3Q13217 504 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 DPYSL3Q14195 570 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MTFR1Q15390 333 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SLC1A5Q15758 541 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 BBS9Q3SYG4 887 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 EFHC2Q5JST6 749 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MARCH8Q5T0T0 291 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PPP1R26Q5T8A7 1209 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SMYD5Q6GMV2 418 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 LCLAT1Q6UWP7 414 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PARP9Q8IXQ6 854 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 FITM2Q8N6M3 262 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GPRC5AQ8NFJ5 357 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 FBF1Q8TES7 1133 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 THOC1Q96FV9 657 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CNPY3Q9BT09 278 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 NT5C1AQ9BXI3 368 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 RSAD1Q9HA92 442 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CD248Q9HCU0 757 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PSMC3IPQ9P2W1 217 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SLC24A2Q9UI40 661 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 XPO7Q9UIA9 1087 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ZMYND8Q9ULU4 1186 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 C2CD2Q9Y426 696 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 LOC102724159A0A0B4J2E5 919 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 NDC80O14777 642 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ENDOD1O94919 500 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SNAI1O95863 264 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CA4P22748 312 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SNAPC2Q13487 334 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PWP2Q15269 919 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 KIZQ2M2Z5 673 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GOLGA7BQ2TAP0 167 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PMF1Q6P1K2 205 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SCYL2Q6P3W7 929 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 DARS2Q6PI48 645 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 C1orf228Q6PIY5 440 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 TBC1D1Q86TI0 1168 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ACOT1Q86TX2 421 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 IGDCC3Q8IVU1 814 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ATP11CQ8NB49 1132 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ZMAT2Q96NC0 199 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MRPL45Q9BRJ2 306 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 KATNBL1Q9H079 304 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SLCO1B3Q9NPD5 702 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 FAM49BQ9NUQ9 324 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GPATCH2LQ9NWQ4 482 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PNMA3Q9UL41 463 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 NME7Q9Y5B8 376 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 E7ESA3 106 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 TYROBPO43914 113 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PRPSAP2O60256 369 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 MAP3K6O95382 1288 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 KRT4P19013 534 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ELF3P78545 371 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GRIK4Q16099 956 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GALNTL6Q49A17 601 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CCDC14Q49A88 953 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 ZC3H12AQ5D1E8 599 aaKnown RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 C9orf131Q5VYM1 1079 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 FAM228AQ86W67 206 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 TTC30AQ86WT1 665 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SCUBE3Q8IX30 993 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PALM2Q8IXS6 379 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 PDIK1LQ8N165 341 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CCDC63Q8NA47 563 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 LRRN4Q8WUT4 740 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 LPIN3Q9BQK8 851 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 GBA2Q9HCG7 927 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-217ENST00000466159 VTA1Q9NP79 307 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 HES2Q9Y543 173 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 SNX9Q9Y5X1 595 aa9.35□□□□□ -0.91
SYNE1-217ENST00000466159 CENPFP49454 3210 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 NPTXRO95502 500 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 IL4RP24394 825 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 EPHX2P34913 555 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 PHBP35232 272 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 NCALDP61601 193 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ROR1Q01973 937 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SPARCL1Q14515 664 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 NOMO1Q15155 1222 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KYAT1Q16773 422 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ECHDC2Q86YB7 292 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SLC10A4Q96EP9 437 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 PAFAH2Q99487 392 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 B3GNT5Q9BYG0 378 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 ECT2Q9H8V3 914 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 NGRNQ9NPE2 291 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SNTG2Q9NY99 539 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SENP1Q9P0U3 644 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 KLHL14Q9P2G3 628 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 SMG5Q9UPR3 1016 aaKnown RBP9.34□□□□□ -0.91
SYNE1-217ENST00000466159 CHMP2BQ9UQN3 213 aa9.34□□□□□ -0.91
SYNE1-217ENST00000466159 PLXNB2O15031 1838 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms