RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 PRRX2Q99811 253 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 KRT82Q9NSB4 513 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 FAM49BQ9NUQ9 324 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 TDP1Q9NUW8 608 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 TMEM30AQ9NV96 361 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 KMT2EQ8IZD2 1858 aa13.82□□□□□ -0.2
COL28A1-206ENST00000465339 TRAV19A0A0A6YYK7 116 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 CHADO15335 359 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 TADA3O75528 432 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 USP17L7P0C7H9 530 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 FAM200BP0CF97 657 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 HOXB1P14653 301 aaPredicted RBP13.81□□□□□ -0.2
COL28A1-206ENST00000465339 YWHAQP27348 245 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 LRMPQ12912 555 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 ZNF268Q14587 947 aaPredicted RBP13.81□□□□□ -0.2
COL28A1-206ENST00000465339 ARHGAP29Q52LW3 1261 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 ZNF394Q53GI3 561 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 RBM43Q6ZSC3 357 aaKnown RBP13.81□□□□□ -0.2
COL28A1-206ENST00000465339 CREBRFQ8IUR6 639 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 GPIHBP1Q8IV16 184 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 FAM114A1Q8IWE2 563 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 PDZD8Q8NEN9 1154 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 LMO3Q8TAP4 145 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 BPIFB1Q8TDL5 484 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 OVCA2Q8WZ82 227 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 RSPRY1Q96DX4 576 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 CNOT6LQ96LI5 555 aaKnown RBP13.81□□□□□ -0.2
COL28A1-206ENST00000465339 SMOQ99835 787 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 ARID3AQ99856 593 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 THAP9Q9H5L6 903 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 KIF9Q9HAQ2 790 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 THG1LQ9NWX6 298 aaKnown RBP13.81□□□□□ -0.2
COL28A1-206ENST00000465339 IL37Q9NZH6 218 aa13.81□□□□□ -0.2
COL28A1-206ENST00000465339 TICRRQ7Z2Z1 1910 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 ZNF840PA6NDX5 716 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 TNFRSF10BO14763 440 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 GLULP15104 373 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 HDCP19113 662 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 AOC1P19801 751 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 RFX1P22670 979 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 ADORA2BP29275 332 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 RAD23BP54727 409 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 EMP3P54852 163 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 MLLT6P55198 1093 aaPredicted RBP13.8□□□□□ -0.2
COL28A1-206ENST00000465339 MAP3K7CLP57077 242 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 TAF10Q12962 218 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 MLF2Q15773 248 aaPredicted RBP13.8□□□□□ -0.2
COL28A1-206ENST00000465339 IRF2BP1Q8IU81 584 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 SLC4A11Q8NBS3 891 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 ZMIZ2Q8NF64 920 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 USP13Q92995 863 aaPredicted RBP13.8□□□□□ -0.2
COL28A1-206ENST00000465339 NELL2Q99435 816 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 FBXO44Q9H4M3 255 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 TBC1D17Q9HA65 648 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 TRPC7Q9HCX4 862 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 PNPLA8Q9NP80 782 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 GCNT4Q9P109 453 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 KIAA1257Q9ULG3 409 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 PATJQ8NI35 1801 aa13.8□□□□□ -0.2
COL28A1-206ENST00000465339 FAM92AA1XBS5 289 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 BEST1O76090 585 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 PRAMEF12O95522 483 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 SLC5A3P53794 718 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 VCPP55072 806 aaKnown RBP13.79□□□□□ -0.2
COL28A1-206ENST00000465339 PPP1R26Q5T8A7 1209 aaPredicted RBP13.79□□□□□ -0.2
COL28A1-206ENST00000465339 SNX30Q5VWJ9 437 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 ARHGAP17Q68EM7 881 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 CWF19L1Q69YN2 538 aaKnown RBP13.79□□□□□ -0.2
COL28A1-206ENST00000465339 SASS6Q6UVJ0 657 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 CLEC20AQ6ZU45 233 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 PPM1KQ8N3J5 372 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 CSGALNACT1Q8TDX6 532 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 FBXO32Q969P5 355 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 JAKMIP2Q96AA8 810 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 LRRC3BQ96PB8 259 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 CYP2S1Q96SQ9 504 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 DDX23Q9BUQ8 820 aaKnown RBP13.79□□□□□ -0.2
COL28A1-206ENST00000465339 DUSP16Q9BY84 665 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 UBXN6Q9BZV1 441 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 SMG9Q9H0W8 520 aaKnown RBP13.79□□□□□ -0.2
COL28A1-206ENST00000465339 SIT1Q9Y3P8 196 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 HELZP42694 1942 aaKnown RBP13.79□□□□□ -0.2
COL28A1-206ENST00000465339 NCANO14594 1321 aa13.79□□□□□ -0.2
COL28A1-206ENST00000465339 MIA3Q5JRA6 1907 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 KANSL1LA0AUZ9 987 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 GTPBP10A4D1E9 387 aaKnown RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 C2orf78A6NCI8 922 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 ARNTLO00327 626 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 MAN2B1O00754 1011 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 ABL1P00519 1130 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 CKMP06732 381 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 TCF3P15923 654 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 MTIF2P46199 727 aaKnown RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 SLC8A3P57103 927 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 GCNT1Q02742 428 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 IFRD2Q12894 506 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 CC2D1AQ6P1N0 951 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 UBR7Q8N806 425 aa13.78□□□□□ -0.2
COL28A1-206ENST00000465339 ARL14EPQ8N8R7 260 aaPredicted RBP13.78□□□□□ -0.2
COL28A1-206ENST00000465339 TMEM105Q8N8V8 129 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms