RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 LRRC4Q9HBW1 653 aa20.9■□□□□ 0.94
COL9A3-204ENST00000463487 IGSF9Q9P2J2 1179 aa20.9■□□□□ 0.94
COL9A3-204ENST00000463487 AJAP1Q9UKB5 411 aaPredicted RBP20.9■□□□□ 0.94
COL9A3-204ENST00000463487 NCANO14594 1321 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 TNFRSF10BO14763 440 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 F11P03951 625 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 PFKLP17858 780 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 KRT9P35527 623 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 PDE4CQ08493 712 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 GPR158Q5T848 1215 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 PIGZQ86VD9 579 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 ZNF606Q8WXB4 792 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 MCRS1Q96EZ8 462 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 NUP58Q9BVL2 599 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 PDCL3Q9H2J4 239 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 TASP1Q9H6P5 420 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 IFNKQ9P0W0 207 aa20.89■□□□□ 0.93
COL9A3-204ENST00000463487 DOCK6Q96HP0 2047 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 NOTCH4Q99466 2003 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 GJA1P17302 382 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 SOX5P35711 763 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 AVPR1AP37288 418 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 PLA2G4AP47712 749 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 USP46P62068 366 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 CYP4F8P98187 520 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 TAF10Q12962 218 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 UBA3Q8TBC4 463 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 E2F7Q96AV8 911 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 NOX5Q96PH1 765 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 TLR8Q9NR97 1041 aaKnown RBP20.88■□□□□ 0.93
COL9A3-204ENST00000463487 IL37Q9NZH6 218 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 LIMD1Q9UGP4 676 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 MYO6Q9UM54 1294 aa20.88■□□□□ 0.93
COL9A3-204ENST00000463487 GREB1Q4ZG55 1949 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 TRAV19A0A0A6YYK7 116 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 HHLA1C9JL84 531 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 MOSPD3O75425 235 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 ABL1P00519 1130 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 SNX16P57768 344 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 SIX6OS1Q8N1H7 587 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 ARHGAP18Q8N392 663 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 SCAMP5Q8TAC9 235 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 ZSCAN18Q8TBC5 510 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-204ENST00000463487 SMARCD2Q92925 531 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 SECISBP2LQ93073 1101 aaKnown RBP20.87■□□□□ 0.93
COL9A3-204ENST00000463487 NECAB3Q96P71 396 aaPredicted RBP20.87■□□□□ 0.93
COL9A3-204ENST00000463487 ZFP14Q9HCL3 533 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 SCML2Q9UQR0 700 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 PATJQ8NI35 1801 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 UNC80Q8N2C7 3258 aa20.87■□□□□ 0.93
COL9A3-204ENST00000463487 FAM92AA1XBS5 289 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 DPYSL4O14531 572 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 EPHB6O15197 1021 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 GFPT2O94808 682 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 PNMA6AP0CW24 399 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-204ENST00000463487 CLCN1P35523 988 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 ACADSBP45954 432 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 PSEN1P49768 467 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 KIF11P52732 1056 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 JAM2P57087 298 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 PLCB2Q00722 1185 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 PKDCCQ504Y2 493 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 TMEM150AQ86TG1 271 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 SLC47A2Q86VL8 602 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 MON1AQ86VX9 555 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 ZNF677Q86XU0 584 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 ZNF397Q8NF99 534 aaPredicted RBP20.86■□□□□ 0.93
COL9A3-204ENST00000463487 KCTD13Q8WZ19 329 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 HSFY1Q96LI6 401 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 ASB16Q96NS5 453 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 EDEM3Q9BZQ6 932 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 TRPC7Q9HCX4 862 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 PCDHGC3Q9UN70 934 aa20.86■□□□□ 0.93
COL9A3-204ENST00000463487 DOCK8Q8NF50 2099 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 USP17L7P0C7H9 530 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 CYP11B1P15538 503 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 WEE1P30291 646 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 TKTL1P51854 596 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 FIGNQ5HY92 759 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 RAB41Q5JT25 222 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 CCDC186Q7Z3E2 898 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 TADA2BQ86TJ2 420 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 RNF135Q8IUD6 432 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 MAB21L3Q8N8X9 362 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 STK32AQ8WU08 396 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 SLC35F5Q8WV83 523 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 ZSWIM1Q9BR11 485 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 NUCKS1Q9H1E3 243 aaKnown RBP20.85■□□□□ 0.93
COL9A3-204ENST00000463487 LHX5Q9H2C1 402 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 KIF9Q9HAQ2 790 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 KCNK12Q9HB15 430 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 TRPV4Q9HBA0 871 aa20.85■□□□□ 0.93
COL9A3-204ENST00000463487 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.85■□□□□ 0.938e-7■□□□□ 8.1
COL9A3-204ENST00000463487 ZNF840PA6NDX5 716 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 ANHXE9PGG2 379 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 ECI2O75521 394 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 TADA3O75528 432 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 CALCAP01258 141 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 CKMP06732 381 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 FERP16591 822 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms