RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 DIO2Q92813 273 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 FRAT1Q92837 279 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 MRGPRX3Q96LB0 322 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 RUNDC3BQ96NL0 473 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 ACAP3Q96P50 834 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 FAM193BQ96PV7 902 aaPredicted RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 CCDC106Q9BWC9 280 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 SPZ1Q9BXG8 430 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 WDR12Q9GZL7 423 aaKnown RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 SIL1Q9H173 461 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 GLT8D2Q9H1C3 349 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 WNT5BQ9H1J7 359 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 VPS11Q9H270 941 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 SERHL2Q9H4I8 314 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 DNAJC18Q9H819 358 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 CRLF2Q9HC73 371 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 UBN1Q9NPG3 1134 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 ACTR10Q9NZ32 417 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 TEKT2Q9UIF3 430 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 ABCC3O15438 1527 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 GPATCH8Q9UKJ3 1502 aaKnown RBP5.78□□□□□ -1.48
VPS41-209ENST00000457055 TMEM2Q9UHN6 1383 aa5.78□□□□□ -1.48
VPS41-209ENST00000457055 NKTRP30414 1462 aaKnown RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 UTRNP46939 3433 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 A0A1B0GUL7 405 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 GOLGA6L4A6NEF3 574 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 GOLGA8BA8MQT2 603 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 C1QTNF3-AMACRE9PGA6 284 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 YKT6O15498 198 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 SRGAP2O75044 1071 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 RFPL3O75679 317 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 CYP2A6P11509 494 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 CSF2RAP15509 400 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 PECAM1P16284 738 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 ZFXP17010 805 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 LPOP22079 712 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 ALDH3A2P51648 485 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 KPNA1P52294 538 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 ARFIP1P53367 373 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 SLC26A5P58743 744 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 HAND2P61296 217 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 NKX3-2P78367 333 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 MRPS15P82914 257 aaKnown RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 COG7P83436 770 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 KCNAB2Q13303 367 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 NFE2L1Q14494 772 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 MXD4Q14582 209 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 STAT4Q14765 748 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 ODF1Q14990 250 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 CFAP221Q4G0U5 840 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 PRAMEF18Q5VWM3 479 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 E4F1Q66K89 784 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 NAIF1Q69YI7 327 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 NEK5Q6P3R8 708 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 DRICH1Q6PGQ1 229 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 GLB1LQ6UWU2 654 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 PDZD4Q76G19 769 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 SPATC1Q76KD6 591 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 TAOK1Q7L7X3 1001 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 CEP57Q86XR8 500 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 SCYL3Q8IZE3 742 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 OR8H3Q8N146 312 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 Q8N1Y9 231 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 ZBTB44Q8NCP5 570 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 LCORQ96JN0 433 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 ATP6V1G3Q96LB4 118 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 DDX23Q9BUQ8 820 aaKnown RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 ACAT2Q9BWD1 397 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 TTLL2Q9BWV7 592 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 C1QTNF3Q9BXJ4 246 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 BRD8Q9H0E9 1235 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 MMADHCQ9H3L0 296 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 SMARCAD1Q9H4L7 1026 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 ANLNQ9NQW6 1124 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 VPS45Q9NRW7 570 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 TOMM22Q9NS69 142 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 OLA1Q9NTK5 396 aaKnown RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 FKBP14Q9NWM8 211 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 EXTL2Q9UBQ6 330 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 HOOK1Q9UJC3 728 aaKnown RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 CLEC4AQ9UMR7 237 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 COA3Q9Y2R0 106 aaPredicted RBP5.77□□□□□ -1.49
VPS41-209ENST00000457055 MED16Q9Y2X0 877 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 GIT1Q9Y2X7 761 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 ATP6V1DQ9Y5K8 247 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 X6R8D5 127 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 ASXL1Q8IXJ9 1541 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 CAMSAP2Q08AD1 1489 aa5.77□□□□□ -1.49
VPS41-209ENST00000457055 MAP3K19Q56UN5 1328 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 TTC21BQ7Z4L5 1316 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 LRRIQ4A6NIV6 560 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 TTC34A8MYJ7 566 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 RSPH10B2B2RC85 870 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 POLR2DO15514 142 aaKnown RBP5.76□□□□□ -1.49
VPS41-209ENST00000457055 MTSS1O43312 755 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 SPOPO43791 374 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 AKAP8O43823 692 aaKnown RBP5.76□□□□□ -1.49
VPS41-209ENST00000457055 NOL3O60936 208 aaKnown RBP5.76□□□□□ -1.49
VPS41-209ENST00000457055 OFD1O75665 1012 aa5.76□□□□□ -1.49
VPS41-209ENST00000457055 TRIM16O95361 564 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms